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GT20953

CSHL Arabidopsis genetrap mutant lines

Original: GT20953

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20953

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 107801 [Map]; Strand: w
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon2 (CDS)
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT20953 - 5-prime edge 
    TGGCTACCTT GATGGAGTCA GTGATGACAC CAGTTATCAA GACGGCGAAG 
    AGCAGCCCGA GGATGCTGTG GTGCAGATCG TACACACATG TCCTCTTCAG 
    GTAGAAGCAG ACGAACACTA TGATGGGAAG AAGCACAGCG TACACAGGGA 
    CAGACCAGAT AGGTACGGTG TTGTCCTTGA AAGGGTACTT GAGGTCAGTC 
    ATCATGTCTT TTCCCACGTA GCGGTAGAAA GGAGAGATGA GGTTCAAGCC 
    TATCTCGATG GCAATCAAGA TGACGAGTAT GATCCAATCG TGCTTGTGTT 
    TAGAAGCGAC TCTTCCTCCA TGGGACTTTA TAGTGTGAAC ACTAAGATCT 
    ATCTCCTGCA TCCTCCCTCT CTGCGCCTCC TGGTCCTGCC ACCAAAAACA 
    CAAACAATCA TCACAGTCGA CTAAACCTTC TTCTAATTGG ATCTAAACAA 
    ACAATTCATG GCTCTCTAAG AAATACTACT TGAGGGTTAG GGCTTGACAT 
    CTCCGGTTTG GATGATAGTA ACAACGGAAT GCAATTCATT CTATCGGATG 
    AACAAATTGG TTTAGGCAAA CAAAGAACTT TGTCAAAGAC ACGACAACAC 
    TTTGCTCTAC GGATCCAGAC ACTTTTTGTC TGTCTGATTC GTTATGCTAA 
    GCACACCACT GTTTCATTAA CAATGTTTTC GTTGACTCTA TTTAACTACT 
    TTATTTTCA

AT2G01180.1

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 2118 Blast hits to 2110 proteins in 392 species: Archae - 9; Bacteria - 357; Metazoa - 920; Fungi - 399; Plants - 198; Viruses - 3; Other Eukaryotes - 232 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01180.2

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR