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GT20988

CSHL Arabidopsis genetrap mutant lines

Original: GT20988

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20988

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 648316 [Map]; Strand: w
      • AT4G01515.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT20988 - 5-prime edge 
    TGAGCTTGCC GTGAACCTCT AGCCATGTAC AGAACGAGTA TTTAGGATTT 
    GAATGGGTAA ACCATATTCC TTTGTACCAA GAAACCTTGC TCGACCCTGA 
    ACGAAGCTGC TTCCATATAT CTTTTGTGCA GAAATTGGCT CTATAGTGAT 
    CAGTTGATCT TTTCCACAAC ACTCTGTCCT CAACATCCCA ACGGTTCTGT 
    CTCTGAAACA ATAGAGCTTC TTCGATCCGA TTAAGGCTCT CCAATCTGTG 
    TCGTCTTCTC GCTCGTCCAG TCCAAGCCTC AGCCACTGTT GATTGCCTTC 
    TCATACCAGA AAGAGGTGCG GTGTCCGTTT CTCACTTCCA CTTTACAAAA 
    CTCCTTTGCG ACATCTCTGT ATTTAATAAG CTTTGACCAC ATCCAAGAGC 
    CCCTATTAGT TGTGGCTTTA ACGGACCAGA AGGTATCAGC TTTGAGTAGA 
    TATTTTTCTA TCCATTGAAC CCATAGAGAG TTTGCATGAG ACACAAGTCT 
    CCAGATTAGT TTTAGGCAGC AGACATCATT TATTTATTTC AAGGGCCGAA 
    GACCAAGTCC TCCTTCCTGC TTCGGTTTAC AGACATCAAC CCAACTGAGC 
    TTAGCTTTAT GCGGATTCAA ATCAGGACCT GACCATAAAA ATGCAGAACA 
    TAGTTTCTCA ATCTCTTTGA TACAACCTCG AGGAAGACGG AAAGCAGAGA 
    GCCAGAAGTT GCAGGTACTC CACAATACTG AAGTTATTAA GCTCAAACGA 
    C

AT4G01515.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 1.1e-18 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)
Link
InterPro Scan - TAIR