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GT20999

CSHL Arabidopsis genetrap mutant lines

Original: GT20999

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20999

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23542882 [Map]; Strand: c
      • AT5G58170.1 - [+] show detail - SHV3-like 5
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT20999 - 5-prime edge 
    CATTAACCTG CTCTTTTGTT TGTTTTTAAG AATCCGTACC TGTCTTTTAT 
    CTTCCAGGAC AAGAGCCTGC CGTTGTGGCC AGAGGGGGCT TCTCGGGTCT 
    TTTCCCTGAG TCAAGCGCCT CTGCAAACGA CTTGGCTATT GGCACCAGCT 
    CGCCTGGCCT CACAATGTTG TGCAACCTTC AGATGACTAA GGACGGTGTG 
    GGCCTTTGCT TGTCAGATAT CATACTTGAC AATGCAACCA CCATATCTTC 
    AGTCTTCCCT AAAGCCCAGA AGACCTACAA GGTCAACGGT CAGGACCTCA 
    AGGGATGGTT TGTCCTTGAT TACGATGCCG ACACCATCTT CAACAATGTC 
    ACTTGTATGT CTTCTCTCTT CTCATCCAAC TCCATTCANT GCTCACCACC 
    ACGACCACAC ATTTTCATCT TTTATGTTAT TGTGCAGTGG TCCAGAACAT 
    CTTCTCTCGG CCTAGCATCT TCGACGGCCA AATGTCGGTT TCCGCAGTGG 
    AGGACGTCCT TGGAACCAAG CCTCCCAAGT TTTGGTTGAT CGTTCAGGTA 
    TGTTTTCTT

AT5G58170.1

Model type
Protein coding
Short Description
SHV3-like 5
Computational Description
SHV3-like 5 (SVL5); FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: SHV3-like 4 (TAIR:AT5G58050.1); Has 2139 Blast hits to 1578 proteins in 572 species: Archae - 0; Bacteria - 1688; Metazoa - 15; Fungi - 4; Plants - 324; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).
Link
InterPro Scan - TAIR