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GT21005

CSHL Arabidopsis genetrap mutant lines

Original: GT21005

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21005

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30344842 [Map]; Strand: c
      • AT1G80740.1 - [+] show detail - chromomethylase 1
        Distance: 0; Region: intron10 (CDS)
    Flanking Genome Sequence: GT21005 - 5-prime edge 
    GGGCCCACCG CACACTGTGT AGACAGTACC CTGAAAAATC ATCAAACATT 
    TAGTTAAGAT TGTAAATAGC TTTATATTAA AAAGATCATA TAAAGCAAAG 
    ATATTATCTT ACCGGAAGTG GTAAGAGATG AGACTTAAAC CCATCTATCA 
    CGTACTCCTT CAGCTTCTCC TTGCAGTTGC TGGAGAAATA TAAAGTAATT 
    ATCAAAGAAA TTATCAAATA TAAAGCAAAG AAATTATCAA TACAAAACTA 
    GGTTAATATA GAAAAGTTAC CCTAAGCCAG AGTAAGGTTC CCATGTGTCA 
    TAACTAGAAT TGTATCCCTT CCACCTTACC TGAGATGAAA TAAAAGATAA 
    AAATGTTTGA ATTATCTCTT AAAAAGGATG AAATTTGTTT GTAACTAATT 
    GAGAATTCGG ATTTATAGTT CAGGAAACAA TACCATAAGT TGAAGTGTCT 
    TTTCCCCTGT GCCTTGAGGA TCTCCAAACA TGATGCCAAG GAACTTTTCT 
    ACTTCAAACT CTCCAGGTTC GAGTTCAGCA CCAGTACTTG CCTCATCTAT 
    GTCATCATTT TCTTCAACTT CTTCATCTCT CTCGACC

AT1G80740.1

Model type
Protein coding
Short Description
chromomethylase 1
Curator Summary
ecotype Kl-0 chromomethylase (CMT1). A plant line expressing an RNAi construct directed against DMT4 has reduced agrobacterium-mediated tumor formation.
Computational Description
chromomethylase 1 (CMT1); FUNCTIONS IN: chromatin binding, DNA binding; INVOLVED IN: DNA mediated transformation, DNA methylation; LOCATED IN: chromatin, nucleus; CONTAINS InterPro DOMAIN/s: Chromo domain subgroup (InterPro:IPR017984), DNA methylase, C-5 cytosine-specific (InterPro:IPR001525), Chromo domain-like (InterPro:IPR016197), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Chromo domain (InterPro:IPR000953); BEST Arabidopsis thaliana protein match is: chromomethylase 3 (TAIR:AT1G69770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR