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GT21014

CSHL Arabidopsis genetrap mutant lines

Original: GT21014

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21014

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 303571 [Map]; Strand: c
      • AT5G01780.1 - [+] show detail - 2-oxoglutarate-dependent dioxygenase family protein
        Distance: 0; Region: intron1 (CDS)
      • AT5G01780.2 - [+] show detail - 2-oxoglutarate-dependent dioxygenase family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT21014 - 5-prime edge 
    TGGTTTTACC AATCCTTTCT ACTCCATGTC AAAGTTCACA GCTTCAAAAC 
    TTGGACAAGC GGTAAGGATG CTTTTGTCTT TTGCAGAGGA ATTTTGGGAT 
    GTAAGAATAG GAGGAGGAGA CGGGCTTCAC GGTTTTTACA TGAAGAATCC 
    AATGGGACAA CTTTTGAGGT TGGCGCTGGT ATTGGCTCTC CAACAAGTAT 
    GGTTCATTCC TACTCGACAA AACCTTTCTT CTTCTAGTAA AAGTTCACAA 
    TCTCAAAATT TGAAAATCCG CAAGGTTAGG AATCACAGGA ATTCTGGATT 
    CAAGAGTAGG GATCAAAGTC CTCAAAGGAT AAAGGATCCT CCGCCTTTCG 
    ACATATGT

AT5G01780.1

Model type
Protein coding
Short Description
2-oxoglutarate-dependent dioxygenase family protein
Computational Description
2-oxoglutarate-dependent dioxygenase family protein; FUNCTIONS IN: oxidoreductase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase family protein (TAIR:AT3G14160.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01780.2

Model type
Protein coding
Short Description
2-oxoglutarate-dependent dioxygenase family protein
Computational Description
2-oxoglutarate-dependent dioxygenase family protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase family protein (TAIR:AT3G14160.1).
Link
InterPro Scan - TAIR