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GT21016

CSHL Arabidopsis genetrap mutant lines

Original: GT21016

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21016

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23542597 [Map]; Strand: c
      • AT5G58170.1 - [+] show detail - SHV3-like 5
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: GT21016 - 5-prime edge 
    CGGTCAGGAC CGCAAGGGAT GGTTTGTCCT TGATTACCAT GCCATACACC 
    TTCTTCAACA ATGTCACTTG TATGTCTTCT

AT5G58170.1

Model type
Protein coding
Short Description
SHV3-like 5
Computational Description
SHV3-like 5 (SVL5); FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: SHV3-like 4 (TAIR:AT5G58050.1); Has 2139 Blast hits to 1578 proteins in 572 species: Archae - 0; Bacteria - 1688; Metazoa - 15; Fungi - 4; Plants - 324; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).
Link
InterPro Scan - TAIR