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GT21075

CSHL Arabidopsis genetrap mutant lines

Original: GT21075

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21075

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 288208 [Map]; Strand: c
      • AT2G01650.1 - [+] show detail - plant UBX domain-containing protein 2
        Distance: -1715; Region: intergenic
      • AT2G01660.1 - [+] show detail - plasmodesmata-located protein 6
        Distance: 2395; Region: intergenic
    Flanking Genome Sequence: GT21075 - 5-prime edge 
    ATCATCATCA ACCAAAAAGA GTGATAAACT TCGCGATACA ATTTTATTTA 
    TACCTTATAT TTTTTTTGAT TAGTTTCGTA AGACCACACT CCAAAGATTC 
    GTGTCTTTTC ATATAACCAG TCAAAAATTG AGATCCTTGT ACTTACATTT 
    TCATATGATC AATCAAATCT TCCTGATAAC TCTAAATTGT TGTGCAATGG 
    TCTCTCCTTT ATTGCAATGT TACATATTCC TAGTCTCTAT TATGGATTAG 
    GTTTATACCA AAAGTTACCA ATTGCAAACA AATAATAAAT CAAAGAAAAT 
    GTTTGAAACA TAGGAACAAG TAACGCATCA TAAAACCTAA GGCTACCTTC 
    ATCTCACTCG A

AT2G01650.1

Model type
Protein coding
Short Description
plant UBX domain-containing protein 2
Curator Summary
encodes a peripheral membrane protein that contains UBX domain and interacts with AtCDC48 in vitro and co-fractionates with membrane-associated but not soluble AtCDC48 in vivo.
Computational Description
plant UBX domain-containing protein 2 (PUX2); CONTAINS InterPro DOMAIN/s: PUB domain (InterPro:IPR018997), UBX (InterPro:IPR001012), PUG domain (InterPro:IPR006567); BEST Arabidopsis thaliana protein match is: ubiquitin-associated (UBA)/TS-N domain-containing protein (TAIR:AT1G04850.1); Has 563 Blast hits to 563 proteins in 115 species: Archae - 0; Bacteria - 15; Metazoa - 269; Fungi - 22; Plants - 176; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01660.1

Model type
Protein coding
Short Description
plasmodesmata-located protein 6
Curator Summary
Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.
Computational Description
plasmodesmata-located protein 6 (PDLP6); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: plasmodesmata-located protein 7 (TAIR:AT5G37660.2); Has 1458 Blast hits to 1310 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1458; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR