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GT21102

CSHL Arabidopsis genetrap mutant lines

Original: GT21102

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21102

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17902493 [Map]; Strand: c
      • AT4G38150.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: -333; Region: promoter
      • AT4G38150.2 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: -333; Region: promoter
      • AT4G38160.3 - [+] show detail - Mitochondrial transcription termination factor family protein
        Distance: 0; Region: exon2 (CDS)
      • AT4G38160.1 - [+] show detail - Mitochondrial transcription termination factor family protein
        Distance: 0; Region: exon2 (CDS)
      • AT4G38160.2 - [+] show detail - Mitochondrial transcription termination factor family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT21102 - 5-prime edge 
    AATGTTACTC AGGTAGTCCC AGTTTTCTGA TGCCACATCG CTTTGAGCCT 
    TTTCCAACTG TTTGCATTTT CTCAACATCT TGTCGATACT CGGATCATCG 
    AAACCTTTGT CCCTGAAGAA CCACATGATG CTGCTCGTAT TTGTCACCTC 
    CATATAAACG CCACTACAAC ACACACAATT TTGCTTAACT TAGAAATGAT 
    TCGAGCTTGA ACAAGGAAGT AGAGAGGAAT TTACCTTGGA GGAGAGCCTT 
    TCCGGCTATC CAATTGAACT GAAAGTGAGA AGCTTATCCA CACGGAGGAG 
    TGAGGACCTT CTTTCTTTCT TATACCCCTG TAAATGACTG TTATATCCCT 
    CAATCCTTCT CGCGTGACTA AAACCCTCCC CTT

AT4G38150.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G03560.2); Has 35233 Blast hits to 8000 proteins in 207 species: Archae - 4; Bacteria - 10; Metazoa - 48; Fungi - 167; Plants - 34530; Viruses - 0; Other Eukaryotes - 474 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38150.2

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G03560.2); Has 35233 Blast hits to 8000 proteins in 207 species: Archae - 4; Bacteria - 10; Metazoa - 48; Fungi - 167; Plants - 34530; Viruses - 0; Other Eukaryotes - 474 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38160.1

Model type
Protein coding
Short Description
Mitochondrial transcription termination factor family protein
Computational Description
pigment defective 191 (pde191); CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1); Has 1644 Blast hits to 948 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 135; Fungi - 0; Plants - 1414; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38160.2

Model type
Protein coding
Short Description
Mitochondrial transcription termination factor family protein
Computational Description
pigment defective 191 (pde191); CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38160.3

Model type
Protein coding
Short Description
Mitochondrial transcription termination factor family protein
Computational Description
pigment defective 191 (pde191); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1).
Link
InterPro Scan - TAIR