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GT21288

CSHL Arabidopsis genetrap mutant lines

Original: GT21288

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21288

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21788572 [Map]; Strand: c
      • AT3G58960.1 - [+] show detail - F-box/RNI-like/FBD-like domains-containing protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT21288 - 5-prime edge 
    TTTGACGGAT TTCTTGAATG GTTTGCTGGC TCTTCCGGCC AGTACCCGCA 
    TAAAGAATGT CTCTATAAAA CGTCGCGGGC GTGATGGACC AAATCGTGAT 
    GCTGATCTCA ACCGTTTTCT CTGTAATGTG CTGAAGCGTG GTGTCTTGAA 
    GCTTAAACTT GATATATGGG TTACCCTCGA CGGAAGATAT TCACTACCTG 
    TTGAAGTCTT CACTTGCAAG ACGCTTGTTG AGCTTGAACT TGGGTCTATT 
    TTACAAATTG ATCTTGTTCC TGAGAATGCT CTTCTTCCGG CGCTTAAGAC 
    TCTCATTATT GATGCAGTTC ATTCCTCTCA ACAATCTGGT TGTGCGTTCC 
    AAAAGCTTCT GTCTTCTTGC CCTGTGCTTG TAGAGTTAAG GATGCTTAAT 
    GTGCAATGGG AGCATTGGCA ATGGTCTCGC AGAGTGTCTA GTCCAACCCT 
    AGAGAAACTT ACTATGAACC ACAGATATCA CTTTGGTAAT ACTTATTATG 
    ATATGGAGGG CATTACTTTT GATACTCCGA GTCTAACCAG CTTAAAGTAC 
    TATGATCTTC CTCCGAAATC ATATCCGACG GTTAATCTCG ACTCCCTTGT 
    TGAAGCTACA ATCTCTCTTA CGTTGCCACT ACATCACGCC TGGACCGGAA 
    AACATGCACG TCGT

AT3G58960.1

Model type
Protein coding
Short Description
F-box/RNI-like/FBD-like domains-containing protein
Computational Description
F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G58980.1); Has 1635 Blast hits to 1579 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1633; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR