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GT21393

CSHL Arabidopsis genetrap mutant lines

Original: GT21393

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21393

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 436114 [Map]; Strand: w
      • AT5G02190.1 - [+] show detail - Eukaryotic aspartyl protease family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT21393 - 5-prime edge 
    CTGCTAACTT CACGTGGTTA ACGCCGTTAA ATTACACGCC GTTAATTCAT 
    CTCTCTCGAC CATTACCTTA CTTCGACCGT GTAGCTTACA CCGTCCAGCT 
    CACGGGTATT AAAGTTAACG GTAAGCTTTT ACCCATCCCT AAATCGGTTC 
    TCGTACCGGA TCATACCGGT GCTGGTCAAA CCATGGTTGA TTCCGGTACT 
    CAGTTTACTT TCCTGCTTGG ACCGGTTTAC ACCGCACTTC GATCCCATTT 
    CTTAAACCGG ACAAACGGAA TCTTAACGGT TTACGAAGAC CCAGATTTTG 
    TTTTCCAAGG AACCATGGAT TTGTGTTATC GGATTTCACC GGTTCGTATA 
    CGGTCCGGAA TTCTCCACCG TTTACCAACA GTTTCTCTGG TTTTCGAAGG 
    AGCCGAAATA GCGGTTTCGG GTCAGCCGCT ATTGTACCGA GTCCCGCATC 
    TCACGGTTGG AAACGATTCG GTTTATTGTT TCACATTTGG AAACTCCGAC 
    CTTATGGGAA TGGAGGCTTA CGTGATTGGA CATCATCATC AGCAGAACAT 
    GTGGATCGAA TTTGATCTAC AAAGATCAAG AATCGGTTTA GCTCCGGTAG 
    AATGTGATGT ATCGGGTCAG AGACTCGGAA TCGGATCGTA AACCATAGAT 
    AACCAGTGTG TAATTATAAT TTTTTGCCTA CGTACAAATG GTTTCTCTAG 
    TAGAAAGGAA TGCACGTGAC TACAATGAGA TTTGTGTTAC GGACAC

AT5G02190.1

Model type
Protein coding
Short Description
Eukaryotic aspartyl protease family protein
Curator Summary
encodes an aspartic protease, has an important role in determining cell fate during embryonic development and in reproduction processes. The loss-of-function mutation of PCS1 causes degeneration of both male and female gametophytes and excessive cell death of developing embryos during torpedo stage.
Computational Description
PROMOTION OF CELL SURVIVAL 1 (PCS1); CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT2G39710.1); Has 2066 Blast hits to 2053 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 96; Plants - 1822; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).
Link
InterPro Scan - TAIR