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GT21662

CSHL Arabidopsis genetrap mutant lines

Original: GT21662

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21662

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3181469 [Map]; Strand: c
      • AT3G10280.1 - [+] show detail - 3-ketoacyl-CoA synthase 14
        Distance: 0; Region: exon2 (CDS)
      • AT3G10282.1 - [+] show detail
        Distance: -501; Region: promoter
    Flanking Genome Sequence: GT21662 - 5-prime edge 
    ACCCACCACT GACTCGTTAG CCGGAATCGT TCTCAATGCT CTCCACACAA 
    TACTATTACA TTTAAAACCC GACCCAAACG CCAACTGCCA AACCCTATCT 
    CCTCGTTTGA CCCGACAATT AGCCTCCACG TAAGCCAGCT CGTACCACAG 
    CGACGAGCTT GAAGTGTTTC CAAAGCGGTG CAAAGTCATC CGAGACGGCT 
    CAAGATCAAA CTCACTAAGT CCAAGACCTT TTTCAACCGC GTCAAGTAAC 
    GCTCTACCAC CAGCGTGAAT ACAGAAATGC TTGAAACATA GTTTAAAATC 
    CGGAACATAT GGACTAACCT TTAACCGGAA AAGCTTACTC TTTACCAAAA 
    AGAGGATAAA CCGGAGTTTT TCAGATAAAG GCAAAACAAG CGGACCAAGT 
    GCTGTTAGAT TCGTCTTTAA CGTGTCACCA GCAACAACCG TTAGTTCTTT 
    AGAGAGTGCG ACTCCAACGA TACCTTTACT ATCTTCTTTT TGTTCAGCAC 
    AAGTGTAGTG TTTATCGCTA GAGCCTTTGT GAGTCCTTAC AATATGAGTC 
    AATTCGTACT TAGACCGGAC TCGGGCTTGA CTCCGGTTTG AGAGCATAAC 
    CGCAGCGCCA CCTACTCGGA ATAGACAGTT AGGGACTAAC ATTGACCGGT 
    CGTTGCCTCG ATACATGCTT AGAGTCATGT TCTCCGTACT AACAATAACT 
    GCGTAGGTAT TAGGGTTTGC CTTTAGTAGA TTTGTGGCGA GGTCCACGGA 
    GATTCCTAAA GAAAGTTCAA GAAGCTATGA AGAG

AT3G10280.1

Model type
Protein coding
Short Description
3-ketoacyl-CoA synthase 14
Curator Summary
Encodes KCS14, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).
Computational Description
3-ketoacyl-CoA synthase 14 (KCS14); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: fatty acid elongation, very long-chain fatty acid metabolic process, cuticle development; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: rosette leaf, fruit, cauline leaf, flower; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 13 (TAIR:AT2G46720.1); Has 1989 Blast hits to 1976 proteins in 413 species: Archae - 0; Bacteria - 666; Metazoa - 0; Fungi - 0; Plants - 1240; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G10282.1

Model type
Pseudogene
Curator Summary
unknown pseudogene
Link
InterPro Scan - TAIR