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GT21684

CSHL Arabidopsis genetrap mutant lines

Original: GT21684

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21684

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 108325 [Map]; Strand: w
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: intron1 (CDS)
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT21684 - 5-prime edge
    CGGAATGCAA TTCATTCTCA TCGGATGAAC AAATTGGTTT AGGCAAACAA 
    AGAACTTTGT CAAAGACACG ACAACACTTT GCTCTACGGA TCCAGACACT
    TTTTGTCTGT CTGATTCGTT ATGCTAAGCA CACCACTGTT TCATTAACAA
    TGTTTTCGTT GACTCTATTT AACTACTTTA TTTTCAATGT TAGGATTTTT
    AAAATGATAA AGAAAAAAGG AGTAGAACAG AGAATAGTCG ATTGAGGTTA
    CCTGAGAATT GCGCCAGAAT AAGAGAGAAG AGAAAAACGA CCCTATTGTC
    ATCAGAAAGT GAAGATCTCG ACTAAGAGAT GAGATGAGGT TAAAAAGAAA
    TGTGGATCTC GAAACTTAGG AGTAAAACAG AGGAATTGAT CTAACGAAGA
    CTATAGATAA ATAGTCCGAT GAGGAGGAGG TAGAAGACGC GTTGTTAAAC
    TTGCGAGTTT TGTTTTGTTT CCCAACTTGA CGGTTTGATA GAAGAATAAG
    AAGAAAACAG AGAGAGACAT GATTAGAAAC TCCTCTTCCT CTTGAATTTT
    GACTTTTGAC TTTTCAGTTA TCGCCGGTCT GATATGGCCT TCGTCTTTC

AT2G01180.1

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 2118 Blast hits to 2110 proteins in 392 species: Archae - 9; Bacteria - 357; Metazoa - 920; Fungi - 399; Plants - 198; Viruses - 3; Other Eukaryotes - 232 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01180.2

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR