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GT21723

CSHL Arabidopsis genetrap mutant lines

Original: GT21723

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21723

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4536480 [Map]; Strand: w
      • AT1G13250.1 - [+] show detail - galacturonosyltransferase-like 3
        Distance: -6417; Region: intergenic
      • AT1G13260.1 - [+] show detail - related to ABI3/VP1 1
        Distance: -5688; Region: intergenic
    Flanking Genome Sequence: GT21723 - 5-prime edge 
    TTGTAGTTAT AGATGTGTAT CTATTAGTCT TGGTCAATAA GGCAAAACTA 
    ATACATACTA CTAAGTTACA TGAATTGTTC GAGAAAGTCT TGTCTTATAA 
    ACTCGTTTAG TTTTCTTTGA GAGTACTTTT TTCTTTCTTT ACTTTGAGAG 
    TACTATGGTT ACGTAGATAA TAATCATCGT TATCGGCTTC TAATTTGTAT 
    AAGATAATAA CTTTTATGCA TTTTCTAACA CGAGAACTTA TCGAGTTATC 
    TCAAACGTCA CGAAAGAAAA AGGACAATGA ACATAATATA TTATATTATC 
    CATTTGTATA TTTAGACATA TATTTTAATT TATTAACTAA ATCCGTTCAT 
    CTCACTCGAC CAACCCTTTT AAG

AT1G13250.1

Model type
Protein coding
Short Description
galacturonosyltransferase-like 3
Curator Summary
Encodes a protein with putative galacturonosyltransferase activity.
Computational Description
galacturonosyltransferase-like 3 (GATL3); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: galacturonosyltransferase-like 4 (TAIR:AT3G06260.1); Has 2168 Blast hits to 2160 proteins in 496 species: Archae - 2; Bacteria - 1004; Metazoa - 285; Fungi - 17; Plants - 765; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G13260.1

Model type
Protein coding
Short Description
related to ABI3/VP1 1
Curator Summary
Encodes an AP2/B3 domain transcription factor which is upregulated in response to low temperature. It contains a B3 DNA binding domain. It has circadian regulation and may function as a negative growth regulator.
Computational Description
related to ABI3/VP1 1 (RAV1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Transcriptional factor B3 (InterPro:IPR003340), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene response DNA binding factor 3 (TAIR:AT3G25730.1); Has 6277 Blast hits to 6015 proteins in 258 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 6251; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
Link
InterPro Scan - TAIR