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GT21742

CSHL Arabidopsis genetrap mutant lines

Original: GT21742

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21742

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2582258 [Map]; Strand: c
      • AT4G05040.1 - [+] show detail - ankyrin repeat family protein
        Distance: 460; Region: intergenic
      • AT4G05048.1 - [+] show detail - U49.1; snoRNA
        Distance: 4720; Region: intergenic
    Flanking Genome Sequence: GT21742 - 5-prime edge 
    CCCCATCACT CTTAGGAACT CTACAAAACA ATTCCCAATA TTCTCTGTTC 
    TGATCCAAGG AGTATTTAAA AACGAGCATA TGAAACTGAA ACAAGATGTC 
    AAATATATAA CAAGTACCTA AACAAGCAAC TTCACGCAAA TTAAACCACA 
    ACAGGGAAAG AAACTGAAAC AAAATGTCAA ATATAACAAG TACTGAATCA 
    AACAACTTCA ATGTATATGA GAAAAGAATG CTCTCTTCTA GCTACTTGCT 
    TTCTCTTGGA TGAGATCCTT ACCAGGAGAC GCCTTTGCAT CGGTGTCTTC 
    ATCAACAAGC AGAATAAATA ATACGAAATA GCCACCAAAG ATAGCAGGAA 
    TGCCAGGTAT TTGTAGAAAA ACGTGAGGGC CAAGGACAAA GAGCATTAGA 
    AAGAGGAAGA TCGCAGAACT AACGTTGAGG AAAATAACAA GCCCCTTAAC 
    ATGTGCAAAT GCAACAAGAA CGCCACAATA GAATGCCACA TGCATGCAGA 
    GAAGAGAGAA AAACAGTGAT GGTAATGCCA CAGTTAAGGA TCTATGAACG 
    AGTGTTGGAT CGCCCAACTG CGACCAGATT AGAGCAGCTA ACGTCACAAT 
    GGAGCTTTGC ATCGCCAGAA TGTCAAATAT CATAAAATAG ACGAGTTTTT 
    GGTCACTGGC TAGAGTTGCC CTGCCCAGGT ACGAACCAGA GCTATTAAAG 
    CCACCTGGTA TTGTAAAACC AGCAGCAAAC GTCACGGTTG CTACAAGAGC 
    TGCCACCACT AGAAGAGTGC TGACGTAGTC TTTGTTTTTG TCACCAG

AT4G05040.1

Model type
Protein coding
Short Description
ankyrin repeat family protein
Computational Description
ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT4G14390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G05048.1

Model type
Small nucleolar RNA
Short Description
U49.1; snoRNA
Curator Summary
Encodes a C/D box snoRNA (U49.1). Gb: AJ300655
Link
InterPro Scan - TAIR