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GT21784

CSHL Arabidopsis genetrap mutant lines

Original: GT21784

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21784

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 6999734 [Map]; Strand: c
      • AT1G20190.1 - [+] show detail - expansin 11
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT21784 - 5-prime edge 
    TTACACTCCG CTTCCCACCT TTATTTAAAC AACTCTCACC TCCTTCACTC 
    GATCATCATC ATCATCATCT CTTTCTTCTT CCAAAAGTCA TAATCATGTC 
    AAAGTCTCTA GCTGGATTGG CGGTTTTGGC CGCTCTTTTT ATTGCGGTTG 
    ATGCGTTTAG GCCTTCTGGT TTAACTAATG GTCACGCTAC ATTCTATGGA 
    GGAAGTGACG CTTCTGGAAC AATGGGTAAT TTCACACTTT AGTTTCATTA 
    TGATCTGACT CTAATGGATT TGTTCAAATA ACGAAATTAT TTTTGTTGTT 
    TTTTTCCAGG TGGAGCTTGT GGTTACGGAG ATCTTTACTC GGCGGGGTAC 
    GGGACAATGA CGGCGGCGTT AAGCACGGCT CTGTTCAACG ACGGAGCTTC 
    TTGCGGAGAA TGCTATAGGA TAACGTGTGA TCACGCGGCG GACTCACGGT 
    GGTGCTTGAA AGGAGCTTCT GTGGTTATTA CAGCCACTAA CTTTTGCCCA 
    CCAAACTTTG CTTTGCCTAA CAACAACGGT GGTTGGTGCA ATCCGCCGCT 
    TAAACATTTC GACATGGCAC AACCCGCTTG GGAAAAGATC GGAATTTACA 
    GAGGAGGAAT CGTTCCCGTC GTTTTCCAAA GGTCAGAACT TTTTAAAAGA 
    CCAAAAAACA GAGTAAGCTG TTATTTTGCA ATTGTTCAAA ACTTCTTAAC 
    GAAAACCTCT GT

AT1G20190.1

Model type
Protein coding
Short Description
expansin 11
Curator Summary
member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)
Computational Description
expansin 11 (EXPA11); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: cell wall; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A1 (TAIR:AT1G69530.4); Has 2193 Blast hits to 2189 proteins in 161 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 64; Plants - 2080; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).
Link
InterPro Scan - TAIR