1. Home
  2. Mutant Lines
  3. GT21787

GT21787

CSHL Arabidopsis genetrap mutant lines

Original: GT21787

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21787

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19398004 [Map]; Strand: c
      • AT2G47240.2 - [+] show detail - AMP-dependent synthetase and ligase family protein
        Distance: 173; Region: intergenic
      • AT2G47250.1 - [+] show detail - RNA helicase family protein
        Distance: 1690; Region: intergenic
    Flanking Genome Sequence: GT21787 - 5-prime edge 
    ATTTCCTCTT GAGCACAAAT GTTGTTTTAG TCATCACTCT GATGTAGTTT 
    CTAGCTTAAC CTAGGGTTTG AATGAGAATT TAAGAAAAAA GAAAAGAAAA 
    GTCAACAATA AACAAATCAA CAACGAAAAC CAAAATGTAT TTTCATATTT 
    TTCTCAACAT AATTTAATAT CACTTCTGAG TTTTTTTTCT AGACTTTATA 
    TGAATCAAAT TCATAGAACG GGTTATTGGA TAGTAAGTTA AATCGTAGTG 
    GTAGTTACGT GGATTTTGGT AGATTATGGA TACAAATAGA GAGTTACATT 
    ACAAAAGCAA AAATCAAAAG AAAAAAAAAT TCCTTAATTA TGATGTAATT 
    GTCTTACACC TTAAAATTAA

AT2G47240.2

Model type
Protein coding
Short Description
AMP-dependent synthetase and ligase family protein
Curator Summary
Encodes an acyl-CoA synthetase that acts on long-chain and very-long-chain fatty acids, involved in cuticular wax and cutin biosynthesis
Computational Description
LONG-CHAIN ACYL-COA SYNTHASE 1 (LACS1); FUNCTIONS IN: long-chain fatty acid-CoA ligase activity, very long-chain fatty acid-CoA ligase activity; INVOLVED IN: fatty acid biosynthetic process, cutin biosynthetic process, wax biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT4G23850.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47250.1

Model type
Protein coding
Short Description
RNA helicase family protein
Computational Description
RNA helicase family protein; FUNCTIONS IN: in 7 functions; LOCATED IN: membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), ATPase, AAA+ type, core (InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RNA helicase family protein (TAIR:AT3G62310.1); Has 10530 Blast hits to 9574 proteins in 1628 species: Archae - 0; Bacteria - 3453; Metazoa - 2465; Fungi - 1286; Plants - 884; Viruses - 707; Other Eukaryotes - 1735 (source: NCBI BLink).
Link
InterPro Scan - TAIR