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GT21839

CSHL Arabidopsis genetrap mutant lines

Original: GT21839

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21839

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 288727 [Map]; Strand: w
      • AT2G01650.1 - [+] show detail - plant UBX domain-containing protein 2
        Distance: -2234; Region: intergenic
      • AT2G01660.1 - [+] show detail - plasmodesmata-located protein 6
        Distance: 1876; Region: intergenic
    Flanking Genome Sequence: GT21839 - 5-prime edge
    TGACAGTCGT GGATATATGC TCAACAACAA AGACGTCTTG TTTAACATTG 
    CCTCTTAGTG AGTTTGTTTT TTTGCATTTT GTGATAAATT TAGTACTTTC
    TCTGTTTCTA TATAAATGTA GTTTAAAAGT TTTTATTTTT TTCCAAAATA
    AGTATTATTT TCAACTTTCT ATGCAAATAA TAAATGTATT TAATATTTTT
    TAAACCAATT ATATTTAACC CGATATTTTC TATTGGTTAT AATTAATGAT
    ATTGTTATAT AAAAGAGGTC GATTAAATAA AAAATTTATG ATTTCTTAAT
    ATGTGTGTAA AAACCTTAAA CAAGTACTAA TATGAAACAG AAGAAATAGT
    ATTTTTTTTC TTCAGCAAAG AAAAAACAAG TACAACCAAA TCAAAATATA
    TAACATGTCT AAGATTTATA TTAGGATCAG GAACTAGTCT TCTAGGAAGT
    TTTTCTTGGC GTTACTCAGC TGGGTCTTAA TTGCATATGT CGTCTCTTTG
    GCTTGCGTTT GAGCCACAGC TTGTTATTCA ATGGGAGGCT GTGACACCCT
    CTTTGTACAA GTTTCACATG TAAGACATAG AAGTCTTGAA TCCAAATACA
    CCAACAAAGA CGATAATGGT ACCGACGGTT CTTGAAAAAG CCCAAGAAGC
    TGTGTGGTGA TCATATTCTC GGGCTGATGA AAATATTGCT TCCTCCCTCA
    TGGCCCAGCG CATCACACAA CACTCACACC TTT

AT2G01650.1

Model type
Protein coding
Short Description
plant UBX domain-containing protein 2
Curator Summary
encodes a peripheral membrane protein that contains UBX domain and interacts with AtCDC48 in vitro and co-fractionates with membrane-associated but not soluble AtCDC48 in vivo.
Computational Description
plant UBX domain-containing protein 2 (PUX2); CONTAINS InterPro DOMAIN/s: PUB domain (InterPro:IPR018997), UBX (InterPro:IPR001012), PUG domain (InterPro:IPR006567); BEST Arabidopsis thaliana protein match is: ubiquitin-associated (UBA)/TS-N domain-containing protein (TAIR:AT1G04850.1); Has 563 Blast hits to 563 proteins in 115 species: Archae - 0; Bacteria - 15; Metazoa - 269; Fungi - 22; Plants - 176; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01660.1

Model type
Protein coding
Short Description
plasmodesmata-located protein 6
Curator Summary
Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.
Computational Description
plasmodesmata-located protein 6 (PDLP6); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: plasmodesmata-located protein 7 (TAIR:AT5G37660.2); Has 1458 Blast hits to 1310 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1458; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR