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GT21854

CSHL Arabidopsis genetrap mutant lines

Original: GT21854

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21854

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1974273 [Map]; Strand: c
      • AT4G04110.1 - [+] show detail - Toll-Interleukin-Resistance (TIR) domain family protein
        Distance: 259; Region: intergenic
      • AT4G04120.1 - [+] show detail - transposable element gene
        Distance: -1271; Region: intergenic
    Flanking Genome Sequence: GT21854 - 5-prime edge 
    TGAGTTTATC GAAAATTAGC CGTAAAATGG TCATTAAATT TGATGACTAA 
    ATAATGACTA TTCAACGCCA AACTTTTCAA CATTAGGCAT AGTCGGCAAT 
    TAGTCGCCAT TTTATGGACT AAGTTACCGA CTACTCATTT TAGTGACTAC 
    TGATTTAGAA CTACTTACAT TAGTCGCCAA ATAGTCGTAA AATCCAAAAT 
    AACGACTATA AAAGCGACTA TAATTATAGT CGTTAACGAG CTGTTTTCTT 
    GTAGCAAATG CAACTTCATC TCACTCGACC ATGGTTTGGT TT

AT4G04110.1

Model type
Protein coding
Short Description
Toll-Interleukin-Resistance (TIR) domain family protein
Computational Description
Toll-Interleukin-Resistance (TIR) domain family protein; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, 4 leaf senescence stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G46470.1); Has 1617 Blast hits to 1532 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1617; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G04120.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 3.8e-19 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element)
Link
InterPro Scan - TAIR