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GT21921

CSHL Arabidopsis genetrap mutant lines

Original: GT21921

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21921

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22552393 [Map]; Strand: c
      • AT3G60961.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: 0; Region: exon6 (3UTR)
      • AT3G60965.1 - [+] show detail - transposable element gene
        Distance: -1000; Region: promoter
      • AT3G60966.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -227; Region: promoter
    Flanking Genome Sequence: GT21921 - 5-prime edge 
    GAGATATTTA CATATACAAA TAAGCATGAA TCTGTAAACT TAGTTACGTA 
    TACGACAAGG CACATCATTG ACTTTGGAGT CTCTGTTTTG TTCTGTTCGG 
    TGAATCCAAG TCCTTGATGC TACAAAGACA AAGACCAAAC AATAATGCAT 
    TACATATCTA CAAGGACTAG AGAGAAAACT GTATGTTTGG ATGATCACGA 
    GCATCACCTT GTCAAGTTTC AGATGCAAAT AGAACTCTGA CAGCCTCGAA 
    AACCTCTTCG CTGGATTTTG CAGCATTGAT CTGGAGAAAA TCAGAAACAA 
    GAATCAGGAA CAGTGTATGA TAGTAATGAT CATGGAAGAG AAGTGGAGAA 
    CCAAATCCTA ACCTTTCGAA GTTTCCCTTT AGACTGGTAG TAGCTAATAA 
    TAGGGAGGGT AGATTCAACA AACACTTTAA ATCGCTTCTT TATGGTCTCT 
    ATATTATCGT CTTCTCTTCC CTTCATAACC AAGAAACGAC ACTAGTAAAA 
    GAGGTACCGG ACCCTAACTA GACAACAATT TCCAAGTAAA AATACCAACC 
    TGGTTCCTGC TCATAATGCG TCTTTCTAGT TC

AT3G60961.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleobase, nucleoside, nucleotide kinase activity, ATP binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G60180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G60965.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 8.8e-146 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element)
Link
InterPro Scan - TAIR

AT3G60966.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G44581.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR