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GT21961

CSHL Arabidopsis genetrap mutant lines

Original: GT21961

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21961

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19687732 [Map]; Strand: w
      • AT2G48140.2 - [+] show detail - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfa...
        Distance: 68; Region: intergenic
      • AT2G48150.1 - [+] show detail - glutathione peroxidase 4
        Distance: 230; Region: intergenic
    Flanking Genome Sequence: GT21961 - 5-prime edge 
    GCTCTTCTCT TCTGTTTTAT TCTTTCTATT ATGTGTTCAT CTCTCTCGAC 
    TAAACCTAAC ATGATGGCTA ACACAGTGTT AGATATCATG TTAGGTTATT 
    GAAGATAATG AATGAACGGG GAGATTGGTC GCCATTCTCT ATAGAGTGTT 
    TCTTTTTATT TGATATATAG AGTGTTTGGT AATTGGTATA CTAATAAAGA 
    TGCTTCTCTA ATTTCTAAAA TTAATTATGA GT

AT2G48140.2

Model type
Protein coding
Short Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Computational Description
embryo sac development arrest 4 (EDA4); FUNCTIONS IN: lipid binding; INVOLVED IN: megagametogenesis, lipid transport; LOCATED IN: anchored to membrane; EXPRESSED IN: embryo, hypocotyl, root, flower; EXPRESSED DURING: C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT1G05450.2).
Link
InterPro Scan - TAIR

AT2G48150.1

Model type
Protein coding
Short Description
glutathione peroxidase 4
Curator Summary
Encodes glutathione peroxidase.
Computational Description
glutathione peroxidase 4 (GPX4); FUNCTIONS IN: glutathione peroxidase activity; INVOLVED IN: oxidation reduction, response to oxidative stress, N-terminal protein myristoylation; LOCATED IN: cytosol; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336), Glutathione peroxidase (InterPro:IPR000889); BEST Arabidopsis thaliana protein match is: glutathione peroxidase 5 (TAIR:AT3G63080.1); Has 7346 Blast hits to 7345 proteins in 1724 species: Archae - 2; Bacteria - 3554; Metazoa - 785; Fungi - 210; Plants - 383; Viruses - 8; Other Eukaryotes - 2404 (source: NCBI BLink).
Link
InterPro Scan - TAIR