1. Home
  2. Mutant Lines
  3. GT22082

GT22082

CSHL Arabidopsis genetrap mutant lines

Original: GT22082

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22082

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 12266269 [Map]; Strand: c
      • AT4G23500.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: GT22082 - 5-prime edge 
    TCGTCGCCGG AGACATGTAG CAGTCCTCAA TCCTCGTGTT GGTACAAGAA 
    TCTGTAATAA ACCGGAAATA ATTTCAGCCA GATTTTTAAA AGCCGGTTAT 
    TGGAATTTTA AGATTTTATC GGTATGATTT CGTTATCGTA CCTGGGTTGA 
    TGCCATCAGT GTTTGGTACC GTGACTGGTG CTAAGATCGT CAAACCTTGG 
    ATAAATATAT TTCTGCATTT GAAAATTAAT TAATAAACAA AACCGGTTTA 
    ATAGGTTAAA TTTGATAACC GGGTGAGTTT AATTTACCTG CTGTAGACCG 
    GGTGAATATG CCAAGAAGGA GAATTCAAGA AAGTGAGATT GGAGATTTGG 
    ATACCATCAG AATGCATAAT CTCAATCAAA TAAGGTCTTG TGTATTTTAG 
    TTCTCCTCTC TTGAATTTTC CCCACCATGG TTCTCCTTGT CCATCAATTG 
    TCCCATTCTC ACCTTTTATT TAGAAATTTG CAATTTCGAA TTAAGATTCA 
    GTTTGCTACA GTGTAATTTT CGGATATTTT GGTTATTTCG ATATAAGTTG 
    AACTACTAAC CGGTGATAAC AACATCGATT AAGTTTGAAC CGAAAAGTAG 
    ACTGATGAAT CTTCCACCAT CTGTGTCTCG CCCTCTTCCA TACGAAGGCA 
    GTGGCTCTAT CACTTC

AT4G23500.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G61490.3); Has 4172 Blast hits to 4159 proteins in 509 species: Archae - 6; Bacteria - 1479; Metazoa - 14; Fungi - 1128; Plants - 1399; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).
Link
InterPro Scan - TAIR