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GT22104

CSHL Arabidopsis genetrap mutant lines

Original: GT22104

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22104

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19669995 [Map]; Strand: c
      • AT2G48090.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -231; Region: promoter
      • AT2G48100.1 - [+] show detail - Exonuclease family protein
        Distance: -506; Region: promoter
      • AT2G48100.4 - [+] show detail - Exonuclease family protein
        Distance: -506; Region: promoter
      • AT2G48100.3 - [+] show detail - Exonuclease family protein
        Distance: -560; Region: promoter
      • AT2G48100.2 - [+] show detail - Exonuclease family protein
        Distance: -690; Region: promoter
    Flanking Genome Sequence: GT22104 - 5-prime edge 
    GCCTGAGAGG AGTGACAGCT GATGCATGAT TCTCAAATCC TGACAGGAAC 
    GTAACAATCC AAAACAAAAA CAACGAAGAA GAAAGAAAGA AAGAAAACAT 
    AGTGGAATCA GAATCCGATC CCTTTCTAAC ATCACTCTTC CTTTTTTGAA 
    AAACTTGTAA AAGTTTCCAA CTTTCCTCTT TTCAACAAGT TGTAATTTCT 
    TCGCTTGTTG CATGTTGAAA CACGTTATTC TGCAATTAAC AAAGATAAAA 
    TCACATAGAT TTTGCATTAT AAAAAGCTCG TTAATGTCAC TATCTTCTCT 
    GCACAGATCA CCTTTAGTAC TTCCCAAGGT GACATCCATG GCAAAGAACT 
    CATCATCACA GAGTAGTAGC AAGAAGAAGC AAGAAAACAG AGTGTGCGAG 
    AAGATCTTCA GAGCAGTGAC TAGTCCTGTC CGAACCGTTC ATCCAACTCG 
    ACCAAAACCT CCCCAACAGA AGATGGTGCC CGCCAAATTT GCGAAAACAC 
    CGCTAAGACC AAGGGAGCCC AAACCCTTAA CAAAGGGGAA CCCGGGGACA 
    TCCCAAGGGA AAATACCAAC AAAAACGAAG AAAAGATCCT CCAAGATTAT 
    AAAAAAAC

AT2G48090.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, root, flower, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48100.1

Model type
Protein coding
Short Description
Exonuclease family protein
Computational Description
Exonuclease family protein; FUNCTIONS IN: exonuclease activity, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT5G40310.1); Has 1569 Blast hits to 1569 proteins in 234 species: Archae - 0; Bacteria - 15; Metazoa - 734; Fungi - 438; Plants - 246; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48100.2

Model type
Protein coding
Short Description
Exonuclease family protein
Computational Description
Exonuclease family protein; FUNCTIONS IN: zinc ion binding, exonuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT5G40310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48100.3

Model type
Protein coding
Short Description
Exonuclease family protein
Computational Description
Exonuclease family protein; FUNCTIONS IN: exonuclease activity, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT5G40310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48100.4

Model type
Protein coding
Short Description
Exonuclease family protein
Computational Description
Exonuclease family protein; FUNCTIONS IN: exonuclease activity, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT3G27970.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR