1. Home
  2. Mutant Lines
  3. GT22147

GT22147

CSHL Arabidopsis genetrap mutant lines

Original: GT22147

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22147

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26937021 [Map]; Strand: w
      • AT5G67500.2 - [+] show detail - voltage dependent anion channel 2
        Distance: 0; Region: exon7 (CDS)
      • AT5G67500.1 - [+] show detail - voltage dependent anion channel 2
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: GT22147 - 5-prime edge 
    GCGATTGATC ATTCGACTGC AGTGAAAGCT AAGCTCAACA ACCATGGCAC 
    ACTTGGTGCT CTTCTGCAGC ACGAGGTCCT GCCCAGATCA CTAGTGACTG 
    TTTCCAGTGA GATTGACACT AAGGCTTTAG AAAAGCATCC AAGGTTTGGT 
    CTCTCTCTTG CTCTCAAACC TTGAGAACAC ACACTCACAT CAGACCTGCT 
    CGAGTCGTCC TACTTTTCTC GAATGCTCTC ATTGTTGATT TCTTCTACGG 
    CAGGACCTGA GAGTTAGCGT TTTTTTCCTC CTTTTTTCCT TACGTTTAAT 
    TGGAATCAAT AAATAGTTCC GCAGTGAAAT TGACGGATAA TTCTTTTTTT 
    GGATATGCTC GGTTTTGTTT TTTTTTACCT TTCTTTTATA ATTAAGCACT 
    CTTCTTGAAT ATACACTCAG TGATTTTTTT

AT5G67500.1

Model type
Protein coding
Short Description
voltage dependent anion channel 2
Curator Summary
Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.
Computational Description
voltage dependent anion channel 2 (VDAC2); FUNCTIONS IN: voltage-gated anion channel activity; INVOLVED IN: response to bacterium, anion transport; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Porin, eukaryotic type (InterPro:IPR001925); BEST Arabidopsis thaliana protein match is: voltage dependent anion channel 5 (TAIR:AT3G49920.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G67500.2

Model type
Protein coding
Short Description
voltage dependent anion channel 2
Curator Summary
Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.
Computational Description
voltage dependent anion channel 2 (VDAC2); CONTAINS InterPro DOMAIN/s: Porin, eukaryotic type (InterPro:IPR001925); BEST Arabidopsis thaliana protein match is: voltage dependent anion channel 5 (TAIR:AT3G49920.1).
Link
InterPro Scan - TAIR