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GT22216

CSHL Arabidopsis genetrap mutant lines

Original: GT22216

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22216

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23415287 [Map]; Strand: w
      • AT3G63400.1 - [+] show detail - Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
        Distance: 0; Region: exon12 (CDS)
      • AT3G63400.2 - [+] show detail - Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
        Distance: 0; Region: exon10 (CDS)
      • AT3G63400.3 - [+] show detail - Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
        Distance: 0; Region: exon12 (CDS)
    Flanking Genome Sequence: GT22216 - 5-prime edge
    TAGACGATTG AGAGACGGAA GCAGGAGCCA GAGTCCGAGG CATCGTAGCC 
    GTAGCCAGAG CCCTAGAAAG AGGCAGCCAA TTAGCCAAGA CCTGAAATCC
    CGTCTCGGGC CACAGAGATC CCCCATCAGA GGAGGACGCA CCTCTCCTGC
    AGAATCACTC AGCCCTTCTC ACTCACCTTC TCCACCAGGA AAGAGAGGTC
    TGGTTAGCTA TGCGGATTGA TGGTCACTCT CATCCATTGG TTTCTCTGCT
    GACTTGCGAG TTTTTGTTTT AATTTCCGTG TTTTAGTGCA AGCAATAATA
    GGTAATGATA TTTTTTATGT TGGTCGGATA TATAATACTC TACCTTAGTT
    GCATTATTAC AGATCGTGGA ACATTGATCA AATTGAGACT GATATATGTT
    GGCAGAATTG AGTTTGGGAA TCGAAGTTTG TAGAAAATTT ATCGAACAAG
    TAGCATAGAT ATCTCAACAT GAAAATCTAG TAATACATGT AAAGAAAGAA
    GGTTAATGAT ATTCCGCATG TTC

AT3G63400.1

Model type
Protein coding
Short Description
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Computational Description
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, RNA splicing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT2G21130.1); Has 55912 Blast hits to 37431 proteins in 3034 species: Archae - 126; Bacteria - 11048; Metazoa - 23197; Fungi - 5408; Plants - 3603; Viruses - 370; Other Eukaryotes - 12160 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63400.2

Model type
Protein coding
Short Description
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Computational Description
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, RNA splicing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT2G21130.1); Has 48708 Blast hits to 30392 proteins in 2888 species: Archae - 119; Bacteria - 11731; Metazoa - 17613; Fungi - 3792; Plants - 2731; Viruses - 247; Other Eukaryotes - 12475 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63400.3

Model type
Protein coding
Short Description
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Computational Description
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, RNA splicing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT2G21130.1).
Link
InterPro Scan - TAIR