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GT22297

CSHL Arabidopsis genetrap mutant lines

Original: GT22297

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22297

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1518996 [Map]; Strand: w
      • AT3G05327.1 - [+] show detail - Cyclin family protein
        Distance: -442; Region: promoter
      • AT3G05330.1 - [+] show detail - cyclin family
        Distance: 0; Region: exon4 (3UTR)
    Flanking Genome Sequence: GT22297 - 5-prime edge
    CTCAATTACA CCCAGCATTT GAGCAAAAGT AATTCCAATA AATAATGGTT 
    TCCTCCATAT ATTTTCTTGA CGATAAAACA ATAACTTATC AACGATACAC
    AAACACATCA AAAACTAAGA TAATATCTTC TTTCATTAAA AACTCTCTCA
    TATTAGATTC TCCTTATCGA GAATCTCTTA GGAACCAAAA CCGGACGCTG
    TTTCAATCCA CTCACCATCT CATGATCATC GCACTTGGCT ACACTTTTCC
    TGCTCTTCAT TGGAGATACA AACCTCATAG CTAGTCTCGA TGGCGAAAAT
    GACCTCCTGA ACTTTGCAGC CGTTGACAGC TTCTGCGACT TGTTGCACAC
    CCTAGTTGGA GAAATCGAAG CTTTGGGTGA CTTCTTACAA AAGTTACCAT
    TTCTTGTTGG AGAAAGAAAT GCTTGAAGTG TGACTCTTTT CGGAGAAATA
    GACGACTTAC GAGCCAAGTT ACTGCCATTT CTCGTAGGAG TAAATGATCT
    TCTGAGCTTA GCAGCAGTTG ATAGCTTTGG AGACCTCTTT CCCGTATTTC
    TAATAGGAGA AATCGACGCT GACTTCTTTC CTAAGTTAAC AGTTCATCTC
    T

AT3G05327.1

Model type
Protein coding
Short Description
Cyclin family protein
Computational Description
Cyclin family protein; CONTAINS InterPro DOMAIN/s: Negative regulatory factor PREG (InterPro:IPR012389), Cyclin-like (InterPro:IPR011028), Cyclin-related 2 (InterPro:IPR013922); BEST Arabidopsis thaliana protein match is: cyclin p4;1 (TAIR:AT2G44740.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G05330.1

Model type
Protein coding
Short Description
cyclin family
Curator Summary
Encodes a protein with moderate sequence similarity to the maize microtubule-binding protein TANGLED1. A single base-pair deletion (-A) at position Chr3:1519176 in Columbia relative to the Landsberg erecta and Achkarren-2 ecotype (see ESTs DR378436 and CB26450) introduces a frame-shift and premature termination codon. The protein encoded from the Columbia gene is truncated by 29 amino acids relative to the Landsberg erecta and Achkarren-2 encoded proteins. Involved in the identification of the division plane during mitosis amd cytokinesis
Computational Description
TANGLED (ATN); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cytokinesis, initiation of separation, phragmoplast assembly; LOCATED IN: microtubule associated complex, preprophase band; EXPRESSED IN: cultured cell; Has 705 Blast hits to 473 proteins in 108 species: Archae - 0; Bacteria - 3; Metazoa - 504; Fungi - 31; Plants - 75; Viruses - 28; Other Eukaryotes - 64 (source: NCBI BLink).
Link
InterPro Scan - TAIR