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GT22308

CSHL Arabidopsis genetrap mutant lines

Original: GT22308

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22308

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28391498 [Map]; Strand: c
      • AT1G75600.1 - [+] show detail - Histone superfamily protein
        Distance: 5; Region: intergenic
      • AT1G75610.1 - [+] show detail - pseudogene, histone H3, identical to histone H3.2 from Medicago sativa GB:AAB...
        Distance: -1231; Region: intergenic
    Flanking Genome Sequence: GT22308 - 3-prime edge 
    TGGAGAGCGT GGTTAGATTC GAATTAAATC ATCAACTATT ATTCTATTAG 
    GGTTTTTGGG TTTTGGATAA TTTCTGCAAC AAAAATACAT TTATGTTAAA 
    ATCTCTTTGA GATATTATTT GGTTACCGAT GATATTAAAC CTTCACTGGT 
    CATCTCTCTC GACC

AT1G75600.1

Model type
Protein coding
Short Description
Histone superfamily protein
Computational Description
Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleosome; EXPRESSED IN: root, flower, leaf, pollen tube; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT4G40030.2); Has 14606 Blast hits to 14598 proteins in 7248 species: Archae - 0; Bacteria - 0; Metazoa - 10603; Fungi - 2033; Plants - 1270; Viruses - 0; Other Eukaryotes - 700 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G75610.1

Model type
Pseudogene
Computational Description
pseudogene, histone H3, identical to histone H3.2 from Medicago sativa GB:AAB36495 GI:488571, Histone H3.2, minor Lolium temulentum SP|P11105, histone H3 Tortula ruralis GI:4574208; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4; blastp match of 96% identity and 6.6e-54 P-value to GP|6006364|dbj|BAA84794.1||AP000559 EST D15300(C0425) corresponds to a region of the predicted gene.~Similar to histone H3 (AB015760) {Oryza sativa (japonica cultivar-group)}
Link
InterPro Scan - TAIR