1. Home
  2. Mutant Lines
  3. GT22381

GT22381

CSHL Arabidopsis genetrap mutant lines

Original: GT22381

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22381

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1552104 [Map]; Strand: c
      • AT1G05310.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT22381 - 5-prime edge 
    CAACATCCTA TCTCTGCGTG GATAAGAACG GTTGCGTGCG ATTTCACGAC 
    GGTGGAATCG GGCGTGGACG CAGTGGGGAA TTTCAGTCAA AGAAGGAACG 
    TGATTTGGAT AAACTCCGGC ATGGACTAGT ATGTTGGCGA TTTAGTTACT 
    ACAATAACAA TTAAGAAATC TATATAAGTA AATGATATAT AAGTATTGCA 
    TGGCAGTGAA AAAGTGGTGA TTCCGAAGAC TAAACCAAAC ATAACGTTGC 
    AAGGACAAGG CTTCGACATT ACAGCCATTG CGTGGAACGA CACTGCCTAC 
    TCAGCTAATG GCACATTTTA TTGTGCCACG GTCCAAGTCT TTGGTTCTCA 
    GTTCATCTCT CTCAACAACA GTTTCATGGG AATTTCATTA ATTTATC

AT1G05310.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT2G36710.1); Has 4576 Blast hits to 3466 proteins in 439 species: Archae - 11; Bacteria - 724; Metazoa - 994; Fungi - 355; Plants - 1773; Viruses - 6; Other Eukaryotes - 713 (source: NCBI BLink).
Link
InterPro Scan - TAIR