1. Home
  2. Mutant Lines
  3. GT22462

GT22462

CSHL Arabidopsis genetrap mutant lines

Original: GT22462

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22462

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5695456 [Map]; Strand: w
      • AT5G17300.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: -2554; Region: intergenic
      • AT5G17310.2 - [+] show detail - UDP-glucose pyrophosphorylase 2
        Distance: 1189; Region: intergenic
    Flanking Genome Sequence: GT22462 - 5-prime edge
    TTCTTCACCA CCATCCATTT ATTTTTTAAG CCAAAGTTTA TATAATCTCA 
    ATTATATACA TGTAATTATA TATAGTTTTT TTTTGCCAAA ATGTTTTCTT
    ATTATTTGAA AAAAAACAAA AAGATTTGGT TTATTATAAA TAAAATTTTT
    GTTTTTAAAT GAAGCTGTCT ATGTAATTTC AATTTTGTAA ACACATGTTA
    TTCATTCATT CTCAAATGTA ACTTCAATGT TGTAAACATT TACAAGACAT
    GTTATATTAA TCATGTATTG CAAATAGATT TACATTAAAA TAAGTATACA
    AATATTGTGA TATCGATGTA ACCTATTTTT TTGGATTGAA AACATTCAAA
    TAAATAAATA AAATAAAAAA AATTAAACAA ATATATATCA CGGTTGTAAT
    ATTTTTGAAA GTGTTGATCA TTTTTAAATA ACCACAAAAT ACTATTGTTT
    TCCTATAACT CAAATCTGTT GGCCAATTCA ACCTAATTAA AATTGCAAAA
    TTTCACATGT AGCCTTGTTA GTACAAATTC ATTCGAAATG TGACTTTGGC
    ATGAGTAGGA AAAAAATAAA AGATTTTACA AATCAATTAT TTTAGTGAAA
    AGAAAAAGAA TTGATGGGTG GGTCTACATA TATAGTTTGG ATAGATAATC
    CCTTTCTATA ACCTTCTACG TATGTTATG

AT5G17300.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Curator Summary
Myb-like transcription factor that regulates hypocotyl growth by regulating free auxin levels in a time-of-day specific manner.
Computational Description
REVEILLE 1 (RVE1); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT5G37260.1); Has 1557 Blast hits to 1521 proteins in 166 species: Archae - 0; Bacteria - 3; Metazoa - 201; Fungi - 29; Plants - 1060; Viruses - 9; Other Eukaryotes - 255 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G17310.2

Model type
Protein coding
Short Description
UDP-glucose pyrophosphorylase 2
Computational Description
UDP-glucose pyrophosphorylase 2 (UGP2); FUNCTIONS IN: UTP:glucose-1-phosphate uridylyltransferase activity, nucleotidyltransferase activity; INVOLVED IN: response to cadmium ion, callose deposition in cell wall, response to salt stress, metabolic process, pollen development; LOCATED IN: plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: UTP--glucose-1-phosphate uridylyltransferase, subgroup (InterPro:IPR016267), UTP--glucose-1-phosphate uridylyltransferase (InterPro:IPR002618); BEST Arabidopsis thaliana protein match is: UDP-GLUCOSE PYROPHOSPHORYLASE 1 (TAIR:AT3G03250.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR