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GT22494

CSHL Arabidopsis genetrap mutant lines

Original: GT22494

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22494

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19330749 [Map]; Strand: c
      • AT2G47040.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
        Distance: -552; Region: promoter
    Flanking Genome Sequence: GT22494 - 5-prime edge
    GAGCTCATTT TTTTAGGATT TTCTTTTAAG AAGAGCTCAT TTAAAGAGTT 
    TGTTATATAG AAGCTCTGAA TATTTATAAT TTAGTTATAT AATCTGGTTC
    ATTCATCTCT CTCGACGAAT GCAGACCAGT TAACCAATGG AATGAAGGTG
    AAAATATGCG CTTTAATGTT TTGACCTATA CATAGTCAAG CTATGACATG
    ACTGATTTTA AAAGGATTTT TTGTAACTCG GTTTTATACA ACTTTGGTTT
    GTTTGGTCCA ACTTGACATA GTATTTAACT AAGGATTAAA AGTAAAATTA
    CAGCTAATAT CACTTAAGGA ATTATAAATT TCTCTTTATT TTTTATTTAT
    TTTTTTCTTC TTTATTTTAT TTTTAGTCAA TCAAACCACC ACAACTTCTT
    CT

AT2G47040.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily
Curator Summary
Share high homologies with a group of pectin methylesterases (PME), pollen specific, and is required for enhancing the growth of pollen tube in style and transmitting tract tissues.
Computational Description
VANGUARD1 (VGD1); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: pollen tube growth; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT2G47030.1); Has 2977 Blast hits to 2908 proteins in 464 species: Archae - 6; Bacteria - 891; Metazoa - 1; Fungi - 197; Plants - 1856; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Link
InterPro Scan - TAIR