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GT22570

CSHL Arabidopsis genetrap mutant lines

Original: GT22570

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22570

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1858317 [Map]; Strand: c
      • AT2G05150.1 - [+] show detail - pseudogene, similar to pyrophosphate-dependent phosphofructokinase beta subun...
        Distance: 390; Region: intergenic
      • AT2G05160.1 - [+] show detail - CCCH-type zinc fingerfamily protein with RNA-binding domain
        Distance: 226; Region: intergenic
    Flanking Genome Sequence: GT22570 - 5-prime edge 
    GTATTGAATG TTCTTTTTCA TGATTCATGA TATATATATA GAAAAAGAGA 
    TTCATTAGAA AGTGATTGAG AACACAATGC ATTTGTTGAT TTTTGTTTTA 
    GTAAGATCTA TATAGCCTTT ATAAGTTTTG GAAGCTAATT TTTTGCTTTA 
    TGAACATCTA TTGAGTCGTT AAAAACAAAA GTGAAAAGAG TTAAAATGTG 
    CTAATTCTGG AGAAGTTAAA GTCATTTTAG ATTCTTTAGA ATATGTTATA 
    TCGAGTTATT ATCTTTGATT TTGTTATTCC ACATGCATAC TTGATTCATA 
    TGTTGAAGAG ACATAAAAAG CTAAAAACTA TGTTTGTTTG TTTTTCAGAA 
    TTTGAAAATT GAAATTTTTG TTTTTTTTCA TAGGAGTATA CAACGTACCC 
    AAATGATTAT GGGGGATTGA TTAAGATCCA CAATAACGCT TAGTAAATCT 
    GATAAGATCC TTGAATATTT TGAGGAAGAA ACTCAAAAAT CTTTAATGTC 
    TCTTCTTTAA GATTCTTCTT CCATTGATCT TCATCT

AT2G05150.1

Model type
Pseudogene
Computational Description
pseudogene, similar to pyrophosphate-dependent phosphofructokinase beta subunit, blastp match of 55% identity and 7.1e-19 P-value to GP|3790100|gb|AAC67586.1||AF095520 pyrophosphate-dependent phosphofructokinase beta subunit {Citrus x paradisi}
Link
InterPro Scan - TAIR

AT2G05160.1

Model type
Protein coding
Short Description
CCCH-type zinc fingerfamily protein with RNA-binding domain
Computational Description
CCCH-type zinc fingerfamily protein with RNA-binding domain; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G52980.1); Has 286 Blast hits to 218 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 277; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR