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GT22757

CSHL Arabidopsis genetrap mutant lines

Original: GT22757

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22757

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19686091 [Map]; Strand: w
      • AT2G48130.1 - [+] show detail - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfa...
        Distance: -98; Region: promoter
      • AT2G48140.1 - [+] show detail - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfa...
        Distance: -318; Region: promoter
      • AT2G48140.2 - [+] show detail - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfa...
        Distance: -318; Region: promoter
    Flanking Genome Sequence: GT22757 - 5-prime edge 
    TTTAATTATA GGAGGAACTG ACCAGAAAAT GTCAAAGAGG CAGGTCTGGT 
    TGGATGACCT ACTTTACATG GTTTATATGG CTTTTATTTA TCAAACATAT 
    CTATGTTCTA GATGCATCCC AATATATACA ACGCCACGTA GACATGAACC 
    AGTATACTTT TTCAGAACTA ATTAAAGATT GTAATTACTT AAGTTACAAA 
    ATTACTAGGA GTATACCAAA CTCAGCTACT TTCTCTTTTT ATTTGGTTTC 
    TCTTTGTTAA TTAATGAAAT AAAAAGAAAA ATTGTGTGTT GATAAGAGAT 
    TGAGAGAAAG GATATTAGTT GGAAGTTGTT GAACTCCAAT GCACCCATTT 
    TATCATATAT AAAACTGAAT AATTGTATAT CTATAAAGCA TCGTCACCGG 
    AAGATTAAGC AGGCCAATTA AAATGGAAGG CTTAACATTG ATAGTAGTGA 
    TGATGTCAAG CTTTATGTTG GGAGGGCAAG GTCAGCAGAT AAGCACGCCA 
    TGCACCTCCT CCATGATCTC TACCTTCACT CCATGTCTCA ACTTCATCAC 
    CGGAAGCAGC GGCGGTTCCG TCACTCCCAC CGCCGGCTGC TGCTACTCCT 
    TGA

AT2G48130.1

Model type
Protein coding
Short Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Computational Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: anchored to membrane; EXPRESSED IN: hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT3G22600.1); Has 1201 Blast hits to 1197 proteins in 63 species: Archae - 0; Bacteria - 8; Metazoa - 1; Fungi - 0; Plants - 1190; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48140.1

Model type
Protein coding
Short Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Computational Description
embryo sac development arrest 4 (EDA4); CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT1G05450.2); Has 541 Blast hits to 526 proteins in 56 species: Archae - 0; Bacteria - 35; Metazoa - 27; Fungi - 2; Plants - 459; Viruses - 2; Other Eukaryotes - 16 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48140.2

Model type
Protein coding
Short Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Computational Description
embryo sac development arrest 4 (EDA4); FUNCTIONS IN: lipid binding; INVOLVED IN: megagametogenesis, lipid transport; LOCATED IN: anchored to membrane; EXPRESSED IN: embryo, hypocotyl, root, flower; EXPRESSED DURING: C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT1G05450.2).
Link
InterPro Scan - TAIR