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GT22934

CSHL Arabidopsis genetrap mutant lines

Original: GT22934

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22934

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22413621 [Map]; Strand: c
      • AT3G60630.1 - [+] show detail - GRAS family transcription factor
        Distance: -1013; Region: intergenic
      • AT3G60640.1 - [+] show detail - Ubiquitin-like superfamily protein
        Distance: -2214; Region: intergenic
    Flanking Genome Sequence: GT22934 - 5-prime edge
    CTCCAGAGTT CATGCAATTT CAACCGTTAG ATAAAAAAAA AAACAAAGGG 
    GGTTAAAAAA AAGCAGGGGT ATTTAGGGAA AACAAGGTTT AAAAAAAAAC
    CCTTCTGTAT CAATTTCCTT TTTGGCTCTA AACCCCCGGT ATAGGTTTTT
    GATTTTTTTA AAAAAACGGC CTTTCAAATT GACCTTTATC AAACCCCCCC
    CACCATTTCG GGACAATGGA ATTATTTACG GAAAAAAAAC CACTAAAAAA
    CGGATTTTTT TAGGTTTTGG GGTTTCAACA ATTCATTTTT TTTTCTTTCT
    TCTCTCCCAA CCCCAATAAC TTATTTATTT GGACCAAAGG AATTAAACCC
    AACTTGACCC CAAATTCTAA AAAAAAAATA AAAAATTTTT AATTATTTTA
    ATTTTTTTTA CAATTTCCCT CCCAAAAAAT TTTTTCCCTG AATTTTCAAA
    AAAAATTTTA ACCCCCCCTT TTTTTTTTTC AAAATTTTAA CCCCCCCTTT
    AAAAAAAAAA ATTTTTTGGT TTAAAAAAAA AAAAAAAAAA ATTTTT

AT3G60630.1

Model type
Protein coding
Short Description
GRAS family transcription factor
Computational Description
HAIRY MERISTEM 2 (HAM2); CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G45160.1); Has 2330 Blast hits to 2284 proteins in 297 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 2323; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G60640.1

Model type
Protein coding
Short Description
Ubiquitin-like superfamily protein
Computational Description
AUTOPHAGY 8G (ATG8G); CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G16520.2); Has 1513 Blast hits to 1511 proteins in 273 species: Archae - 0; Bacteria - 0; Metazoa - 719; Fungi - 178; Plants - 302; Viruses - 3; Other Eukaryotes - 311 (source: NCBI BLink).
Link
InterPro Scan - TAIR