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GT23006

CSHL Arabidopsis genetrap mutant lines

Original: GT23006

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23006

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4531071 [Map]; Strand: c
      • AT1G13250.1 - [+] show detail - galacturonosyltransferase-like 3
        Distance: -1008; Region: intergenic
      • AT1G13260.1 - [+] show detail - related to ABI3/VP1 1
        Distance: -11097; Region: intergenic
    Flanking Genome Sequence: GT23006 - 5-prime edge 
    TTTTCTCTCT GTCTGACAGG AGGGAAAAAA CTGCGCCTTA ATCATCGTAG 
    TCTTGATGAA ATATTGAACA TTCTCAAAAT CTATTTTGAA AATCCAAGAA 
    TTTGTATCGT TACACTGTAG ACATGGGATA TCCAAAATCA TGATGACATT 
    ACAGTTTAAG ACAAACTTTA AGTGGATATG AAAATTGGGA AGAGTGAGAA 
    AGAAGAATCT ATGAAGGATA ATATTCCTTT AACAAAGCAA AAACATCCAA 
    ACATTTGTGT TTGCAACTTT CATCTTTTAT TTTTTGCATC ATGTTCAATA 
    TTCAACTCAC GGACCAATAT ACCTAAGTCT TGTGGTTTCT TCGAATGAAA 
    AAACAAAAGA TTTTACTAGT ACATTTTGAA AATTCACAAC TTTACTTTTT 
    TACTTATGAT AAAAAAAAAA GGGTTTTACC GTTCTGCAAT AACCAAATTA 
    AATTTGGTAT CATTTATGGC ATATAAGTTA GCTGAAAAAA GTGCATTAAT 
    GGGGGGGATA TCTAACTGAG GAGGGGTATC ATTTTGAGTG ATAAAGCCAA 
    TCTGTATCCC CGGTTTTTCT TTATCTTTAA TCAGTTTAAA TCAAATATGT 
    TTGGCGTATT TAAAATCCAA TTGACCAATA TCAATGTAAA ACCAAAAAAA 
    AAAAAATGAT GATAACATGA ATGCTTTTGG TTCAATCGAT GTCA

AT1G13250.1

Model type
Protein coding
Short Description
galacturonosyltransferase-like 3
Curator Summary
Encodes a protein with putative galacturonosyltransferase activity.
Computational Description
galacturonosyltransferase-like 3 (GATL3); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: galacturonosyltransferase-like 4 (TAIR:AT3G06260.1); Has 2168 Blast hits to 2160 proteins in 496 species: Archae - 2; Bacteria - 1004; Metazoa - 285; Fungi - 17; Plants - 765; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G13260.1

Model type
Protein coding
Short Description
related to ABI3/VP1 1
Curator Summary
Encodes an AP2/B3 domain transcription factor which is upregulated in response to low temperature. It contains a B3 DNA binding domain. It has circadian regulation and may function as a negative growth regulator.
Computational Description
related to ABI3/VP1 1 (RAV1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Transcriptional factor B3 (InterPro:IPR003340), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene response DNA binding factor 3 (TAIR:AT3G25730.1); Has 6277 Blast hits to 6015 proteins in 258 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 6251; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
Link
InterPro Scan - TAIR