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Mutant Lines
GT23010

GT23010

CSHL Arabidopsis genetrap mutant lines

Original: GT23010

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23010

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 4; Position: 179758 [Map]; Strand: w
- AT4G00416.1 - [+] show detail - methyl-CPG-binding domain 3
  Distance: 245; Region: intergenic
- AT4G00420.1 - [+] show detail - Double-stranded RNA-binding domain (DsRBD)-containing protein
  Distance: 1565; Region: intergenic

TTTCTCTCTG TCTGCATAGT AATCTCCTTC TCTCTGAAAA ACTGCTACCT 
AAATTACTAG CAGCAAACTT TGAATCATAC ACGCTTCTTA GAATTCAAAG 
CTTCTGAAAG TCCATCTTTG AACAACTCAA CCTTTGATTT ATCTTTGCAC 
TTCTGATATT TTGACAGTCT TAGACCATTC TGGTAGCTTT CCTTGTAGCT 
ATCTCACACT AACTGATACA ATGACGTTCT TGAGGCCCTT TTAACACAAT 
GATTTAATCA ACCTTGAGAT CTTTGCAAAT CATAGCTTTT GATCATTCTC 
TGAAATTCCT TCTCTTTGAA GCAACAATAT CGAAGGTCTC TTTCTCCTTG 
TGATAGCAAC AGATTCATAA ATACTTAAAT ATGCGAATCC TTCTCTTTAA 
GAACGAGCTA TGAGAAGACT GATTCTTCAC CACTAACTTG TGTTTTACGT 
TTCTTCAACA AACTTAATTA CAGGTTCTTT CATATTAATA ACTCTTCATG 
ATAAACCAAG TTCTGAAGAT GCCAACGTAG AGATCAGTCT CAGACTCCAT 
TACTCAAATG CCTTGTAGTT TCAAGCCAAT GCTGACATTC ATGTCTCTTT 
GCCTT

AT4G00416.1

Model type: Protein coding
Short Description: methyl-CPG-binding domain 3
Curator Summary: Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.
Computational Description: methyl-CPG-binding domain 3 (MBD3); FUNCTIONS IN: methyl-CpG binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: methyl-CPG-binding domain 4 (TAIR:AT3G63030.1); Has 103 Blast hits to 103 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00420.1

Model type: Protein coding
Short Description: Double-stranded RNA-binding domain (DsRBD)-containing protein
Computational Description: Double-stranded RNA-binding domain (DsRBD)-containing protein; FUNCTIONS IN: double-stranded RNA binding, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720); BEST Arabidopsis thaliana protein match is: RNAse THREE-like protein 1 (TAIR:AT1G80650.1); Has 64 Blast hits to 64 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR