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GT23022

CSHL Arabidopsis genetrap mutant lines

Original: GT23022

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23022

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17834908 [Map]; Strand: c
      • AT4G37930.1 - [+] show detail - serine transhydroxymethyltransferase 1
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT23022 - 5-prime edge
    CGACAAAGAA ACAACAAATA TAAAATAAAA ATCAGAAGAA AATATAAATA 
    AAAAAAGAGG GAAAAAATTC GAAAATTTGC TGCAACCACC AAAAGCTCAG
    CCAAAAGCAG AGGCCACAAT TCTCTCAAAC AAGATAAACC CAATTTTGTT
    ATTTTTGTTC TCTCTTCTCT CTCGTTCATG TTTCAAATCT GTTTCTAGGG
    TTTCACAAAC CAGAGATAGA GAGAGGTTTA GCGAAAAATG GCGATGGCCA
    TGGCTCTTCG AAGGCTTTCT TCTTCAATTG ACAAACCCAT TCGTCCTCTT
    ATTCGATCCA CTTCATGTTA CATGGTAACA ACCCTAAAGT TTCTTCCTTT
    TATCTCCGAA TTTTATAATC GGATTGGAAA TTTTCGATTT TTTTTTTTTT
    TTTTTCGAAT TTTGGTTTGG CCCGGGGCAC CCTTTTTTCC CCAGGAAAGT
    TTTTGAAAAA AAAAAAAAAT TCCGGGTCCT TGGGATTTTA ACCCCCTTTT
    TGAACCCTTG GTTTGTTAAA ATTTTTCCTG GGGGTAAAAA CAAGGTTTTT
    AATTTTTAAA TTTTTTTTTT TTTTTCAAAT TGGGGTGGGG ATTTTTTTTT
    TTGGGGG

AT4G37930.1

Model type
Protein coding
Short Description
serine transhydroxymethyltransferase 1
Curator Summary
Encodes a protein with mitochondrial serine hydroxymethyltransferase activity, which functions in the photorespiratory pathway, catalyzes the conversion of serine and tetrahydrofolate to glycine and 5,10-methylene tetrahydrofolate. Involved in controlling cell damage caused by abiotic stress, such as high light and salt and the hypersensitive defense response of plants.
Computational Description
serine transhydroxymethyltransferase 1 (SHM1); FUNCTIONS IN: poly(U) RNA binding, glycine hydroxymethyltransferase activity; INVOLVED IN: in 8 processes; LOCATED IN: in 9 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Serine hydroxymethyltransferase, pyridoxal phosphate binding site (InterPro:IPR019798), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Serine hydroxymethyltransferase (InterPro:IPR001085); BEST Arabidopsis thaliana protein match is: serine hydroxymethyltransferase 2 (TAIR:AT5G26780.1); Has 11621 Blast hits to 11596 proteins in 2825 species: Archae - 258; Bacteria - 6371; Metazoa - 337; Fungi - 287; Plants - 346; Viruses - 6; Other Eukaryotes - 4016 (source: NCBI BLink).
Link
InterPro Scan - TAIR