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GT23096

CSHL Arabidopsis genetrap mutant lines

Original: GT23096

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23096

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1635814 [Map]; Strand: c
      • AT5G05530.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT5G05540.1 - [+] show detail - small RNA degrading nuclease 2
        Distance: -484; Region: promoter
      • AT5G05540.2 - [+] show detail - small RNA degrading nuclease 2
        Distance: -484; Region: promoter
    Flanking Genome Sequence: GT23096 - 5-prime edge 
    CTTTACTTTC TTCCATCAAG TGATATTCAA CATCTTCTGC TTCAGCCTTG 
    AGCTCGAAAG CTCTTCCTCT GCTTTCTCCG ATGAGTTCCA ATGCCATACA 
    AAACCAGAAT CTCCCGAATC CTTGGCTCAA CATCCGCCAA AACAAGAGAC 
    ACGTGTCGAA GACATGTTTC TACGTCGGAG GCTGCTAGAA ACTCTGAAGA 
    GATCTCGAAT TTGAGTTGAA GTGGTCGACC TAGTGATGTC TGTCCGAAAA 
    GTCGTTCTTT CCCGGTGATC GGACGGTAGA TGTCTCGTCG GAAAGTCGCT 
    AGTGTGATGG AAAAATGGCT AGCGGAATTT GAATGGAAAC GCGGTGAGAA 
    AGTGACCGGG TAGAAAAAGA CTCGCCGGTT GTTTTGCTTT TGCATGACTT 
    TGTCCACCCA ACAATCTACT TGTAGTTGGA CTTATATTTA TAGAGATGAC 
    AGTACTCGAT CCAAAACATA TTCATGAAAA AGGAAACAAA AATTTATTCT 
    ACCGTGTCAT CTTTATCTT

AT5G05530.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: AtL5 (TAIR:AT3G62690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G05540.1

Model type
Protein coding
Short Description
small RNA degrading nuclease 2
Computational Description
small RNA degrading nuclease 2 (SDN2); FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: small RNA degrading nuclease 3 (TAIR:AT5G67240.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G05540.2

Model type
Protein coding
Short Description
small RNA degrading nuclease 2
Computational Description
small RNA degrading nuclease 2 (SDN2); FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: small RNA degrading nuclease 3 (TAIR:AT5G67240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR