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GT23111

CSHL Arabidopsis genetrap mutant lines

Original: GT23111

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23111

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22879619 [Map]; Strand: c
      • AT3G61810.1 - [+] show detail - Glycosyl hydrolase family 17 protein
        Distance: 1150; Region: intergenic
      • AT3G61820.1 - [+] show detail - Eukaryotic aspartyl protease family protein
        Distance: 185; Region: intergenic
    Flanking Genome Sequence: GT23111 - 5-prime edge
    TTAGTGCATC TCGATATTTT ATGGTATGAG CGTACATATA TGTATATATT 
    GTGCCTATCG TAAACGACAC ACGGTATCGT TAATGCAAGA TGGACGTATG
    TTCTTGGTTT TTGGCTCTCC ATGTGAATGA GAGAGTGTGA ATATCCGACA
    CCAGTTCTTG GTTTTATGTG TTATGTGAAG CAGTCTCTAT TTTGACAAAA
    TAATTGCTTC AGTAACTAAC AAATCACTAA TCATTAATAA TAACAAAAAT
    CATAAGTGAG ATGGGAAAAT AAAATAAACA AAAAAAATCC TCAATGACGG
    ATACAGATAC AAAGTGCGGT ACGTTGGCCC ACATGGACAG AATAATGCAA
    CCACCGAACG AGCCACCAAT TTTATACCCA CTCCCTTCCC GCCTCTTTCC
    TCCGTAAATA TCT

AT3G61810.1

Model type
Protein coding
Short Description
Glycosyl hydrolase family 17 protein
Computational Description
Glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT4G29360.1); Has 2169 Blast hits to 2156 proteins in 157 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 56; Plants - 2095; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G61820.1

Model type
Protein coding
Short Description
Eukaryotic aspartyl protease family protein
Computational Description
Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT1G01300.1); Has 3770 Blast hits to 3746 proteins in 344 species: Archae - 0; Bacteria - 0; Metazoa - 956; Fungi - 705; Plants - 1946; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).
Link
InterPro Scan - TAIR