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GT23127

CSHL Arabidopsis genetrap mutant lines

Original: GT23127

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23127

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 152825 [Map]; Strand: c
      • AT4G00342.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 173...
        Distance: -913; Region: promoter
      • AT4G00350.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT23127 - 5-prime edge 
    CAGCCGAGAC ATCAAACGCA GCCGCTGCGC CGTTTAGCCC CCACTTGAAA 
    ACGTTTATAA AGAGGTAGAG GATGAAAATG TGAAGGGTCA AAGCGAAGAA 
    ACCTATCCAT GCCATGATCC CTACTTTGCT CTGTGACTGG AGAAACTTCT 
    GAGTCGGGAA ATTGATAGCG AGCGCAAACA TTTGAGGGAT GATTTGTGTA 
    GTGAATTTGC CAGAGATCTC TGCGATTTCG GGTTCATCTC ACTCGA

AT4G00342.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00350.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: detoxifying efflux carrier 35 (TAIR:AT4G25640.1); Has 10139 Blast hits to 10053 proteins in 1934 species: Archae - 181; Bacteria - 7281; Metazoa - 140; Fungi - 324; Plants - 1355; Viruses - 0; Other Eukaryotes - 858 (source: NCBI BLink).
Link
InterPro Scan - TAIR