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GT23133

CSHL Arabidopsis genetrap mutant lines

Original: GT23133

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23133

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3156363 [Map]; Strand: w
      • AT5G10090.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -618; Region: promoter
    Flanking Genome Sequence: GT23133 - 5-prime edge 
    AAAAAGGGTC CGAGTTTTTC TCGACCCGAT TCTATTTTTG GTTGATTTTT 
    TGGGGTTCAA ATTTGTTATT ATATTTTTTC TAAGTAATTT AAAGTGTTTA 
    CGACGACGTA TGTGGATTGC TCATAAAATC TAAAATAATG TGGGTTCACC 
    AAATCAAGAA TCTAAAGAGA CAATTTTCTA GTTATCTTTA TATATATGTT 
    TGTATTTGCC ATTTAGAAGT TTAGAACTCA AAACTCAGTT CTTACAATGC 
    TAGCTATAAT TTGCATGAAA ATAGAAAATG ATATTTTCGT GTCTTCTTTT 
    TTTTTGGCAA AATTTTGGGA AAAAAATTTT TAAACCCCAC TTGGTAATTA 
    AAAAAAAAAA AAAAATGTTT AAGTTGGACT GGCCCTCAAT TTCCGGACGG 
    GGTGGAAAAC TGGGATACCT ACCTAAAAGT TCCGGGAAAA AACTAATTTT 
    AAATGAATTA AAAAATGGTT TTTAAATAAT GAATTAATAC TAATCACCCC 
    CGAACCCTAA ATTAAAAACA AAAAACAACA ATAAACAATT TTTAAACGAA 
    GGGGTAACTA ACAAATTAAG TTAACTCCTT AACCCACCAA CGGGAAAAAA 
    CAAAACCCTA ATATTAAAAA ACAAAGGGA

AT5G10090.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide TPR2 (InterPro:IPR013105), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT5G65160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR