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GT23172

CSHL Arabidopsis genetrap mutant lines

Original: GT23172

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23172

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 5839 [Map]; Strand: w
      • AT3G01020.1 - [+] show detail - ISCU-like 2
        Distance: 0; Region: exon3 (CDS)
      • AT3G01030.1 - [+] show detail - C2H2 and C2HC zinc fingers superfamily protein
        Distance: -818; Region: promoter
    Flanking Genome Sequence: GT23172 - 5-prime edge 
    TTGCCACCGG TAAAGCTACA TTGCAGTATG CTTGCAGAGG ACGCTATCAA 
    GTCCGCGGTC AGAGACTACA AGGAGAAGCA AGCAAAGACT AATGCTGCTG 
    CTGCAGAAGA AACCGTCAAG GCCTGATGAT TCCACTTATA CCGCATTGTG 
    CTGCTGCTGA TGATGAATTA CACAAACTTA CAAAGAGAGG TGTGTTTGGT 
    TGTTTTAGTT TTTCTCTTCT TTTCACACGA TTATTTAAGT GCTTTGAATA 
    AAAATAGCTG AGCATGTGAC CCAGATCCCA AGTTTTTTCT GCATTGTGAT 
    GATTCCTCTT CAATGTCTTA TGGAATAATT TGTTGCTGTG ATATTGATAA 
    TTTTGATCAT TTGATGTTAG ACATAGCTGT GAGATTATAA TGACACAAGC 
    TTCAGCCTGA ACATTCACAA AATAAGATCA AGTCACCAAA TAAGGGCCTT 
    AACAAATGAA AAGCCCAAAG CCTTGCCACA GCAGTCACCA TTTGTCACGT 
    CGAACCTTCT AACTGAAACA AAAGTTCTCC TCCACTTCTT ATAGGCAAAG 
    CAATTTACGA AAGTGCCCCT TTCTTCTTCC GTAGCTGCTC TCACTTCTCT 
    CAATGCTTAT TGATCTCTCT CTTTCCACTT TCTCTCTTGC TCGCTCTCAC 
    TCT

AT3G01020.1

Model type
Protein coding
Short Description
ISCU-like 2
Curator Summary
Encodes a mitochondrial protein similar to E.coli IscU. In bacteria, IscU is a scaffold protein accepting sulfur and iron to build a transient Fe-S cluster,which is subsequently transferred to a target apoprotein.
Computational Description
ISCU-like 2 (ISU2); CONTAINS InterPro DOMAIN/s: NIF system FeS cluster assembly, NifU, N-terminal (InterPro:IPR002871), ISC system FeS cluster assembly, IscU scaffold (InterPro:IPR011339); BEST Arabidopsis thaliana protein match is: SufE/NifU family protein (TAIR:AT4G22220.1); Has 5480 Blast hits to 5480 proteins in 1991 species: Archae - 108; Bacteria - 3649; Metazoa - 148; Fungi - 153; Plants - 89; Viruses - 0; Other Eukaryotes - 1333 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01030.1

Model type
Protein coding
Short Description
C2H2 and C2HC zinc fingers superfamily protein
Computational Description
C2H2 and C2HC zinc fingers superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-type zinc finger family protein (TAIR:AT5G15480.1); Has 99 Blast hits to 95 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR