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GT23246

CSHL Arabidopsis genetrap mutant lines

Original: GT23246

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23246

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 263258 [Map]; Strand: c
      • AT2G01570.1 - [+] show detail - GRAS family transcription factor family protein
        Distance: -5708; Region: intergenic
      • AT2G01580.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 1786; Region: intergenic
    Flanking Genome Sequence: GT23246 - 5-prime edge
    ACGGAATTAT TAAATACACC AAACAATATG GATAAGTCTA TAAGACGTAC 
    GAGCCATCTT TTATTCATGT GGACTTCATG CTTCTTGCAC CTGAAGCCAA
    CGAAAGCATG ATTTGTTGGT CCTCCTCCTC AGTCCTCACT TCTCTTCCTC
    TTATTATTGC TTTTGCGTAT CGTCGTTTTC ATAAAGCAAA TCGAAGATGA
    TAAGATAAAT ATATAAAACA GTTTTGTTTT CACTCGTTTT GACGTCGTAG
    ATCTCAAATC TTATTATCTT AAAGCCTTGT GTCCCCTCTC TGGCCAACCG
    ATTCTTCTCT CTCGA

AT2G01570.1

Model type
Protein coding
Short Description
GRAS family transcription factor family protein
Curator Summary
Member of the VHIID/DELLA regulatory family. Contains homopolymeric serine and threonine residues, a putative nuclear localization signal, leucine heptad repeats, and an LXXLL motif. Putative transcriptional regulator repressing the gibberellin response and integration of phytohormone signalling. DELLAs repress cell proliferation and expansion that drives plant growth. The protein undergoes degradation in response to GA via the 26S proteasome. RGA1 binds to PIF3 and inhibits its DNA binding activity and thus affects the expression of PIF3 regulated genes. RGA may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Represses GA-induced vegetative growth and floral initiation. Rapidly degraded in response to GA. Involved in fruit and flower development.
Computational Description
REPRESSOR OF GA1-3 1 (RGA1); CONTAINS InterPro DOMAIN/s: Transcriptional factor DELLA, N-terminal (InterPro:IPR021914), Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor family protein (TAIR:AT1G14920.1); Has 2724 Blast hits to 2666 proteins in 317 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 4; Plants - 2709; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01580.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G07510.2); Has 129 Blast hits to 129 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR