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GT23283

CSHL Arabidopsis genetrap mutant lines

Original: GT23283

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23283

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2516540 [Map]; Strand: c
      • AT3G07890.1 - [+] show detail - Ypt/Rab-GAP domain of gyp1p superfamily protein
        Distance: 0; Region: exon9 (3UTR)
      • AT3G07890.2 - [+] show detail - Ypt/Rab-GAP domain of gyp1p superfamily protein
        Distance: 0; Region: exon8 (3UTR)
    Flanking Genome Sequence: GT23283 - 5-prime edge 
    AGCCAAAAAG TGCAAACGAG GGAGTCCAAC AATGGTTTAT TTATCCCTCT 
    TGATGTTTTT TTTTTTTCCC TTTTTTTCCA AAAAAAAAAA AAAAGGATTT 
    TTAAAGTTTA TTTTGAAAAC AAAAATTTAA CCAAAACCCT TTTCGAAAAG 
    GGGAAAGGGC CGGTTTCTCC CCTTTCCAAA AGGGGGCCCT GGCCTTTTGG 
    TTTTTTTCCC CCCCCCCAAA AAACAATGGG GACCCCCGGG TTTTTAAAAA 
    AAAAGGGTGG GTTTGGAAAA AAAATGGGAA ACGGGCCCCC CCCCCCC

AT3G07890.1

Model type
Protein coding
Short Description
Ypt/Rab-GAP domain of gyp1p superfamily protein
Computational Description
Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT2G37290.1); Has 5103 Blast hits to 5093 proteins in 230 species: Archae - 0; Bacteria - 0; Metazoa - 2600; Fungi - 1061; Plants - 534; Viruses - 0; Other Eukaryotes - 908 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G07890.2

Model type
Protein coding
Short Description
Ypt/Rab-GAP domain of gyp1p superfamily protein
Computational Description
Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT2G37290.1); Has 5103 Blast hits to 5093 proteins in 230 species: Archae - 0; Bacteria - 0; Metazoa - 2600; Fungi - 1061; Plants - 534; Viruses - 0; Other Eukaryotes - 908 (source: NCBI BLink).
Link
InterPro Scan - TAIR