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GT23290

CSHL Arabidopsis genetrap mutant lines

Original: GT23290

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23290

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1420943 [Map]; Strand: c
      • AT2G04170.5 - [+] show detail - TRAF-like family protein
        Distance: -1426; Region: intergenic
      • AT2G04180.1 - [+] show detail - transposable element gene
        Distance: -1095; Region: intergenic
    2. Chromosome: 3; Position: 15479306 [Map]; Strand: c
      • AT3G43572.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 173...
        Distance: -73; Region: promoter
    Flanking Genome Sequence: GT23290 - 5-prime edge 
    TCAGGAATCT ATGCGAGAGA GATCCACCTG TTATGTTGCA GCTTCACACA 
    TATCTTTTGC GAATCATGTT TCTTGCTTCA GCGAATTGTT TGAGTTTGCC 
    AAAAGACCCT TACTCCTTAT CAACGTCATT ATGTCTTGTG ACAATGACCA 
    ATCTTCCACT TCCCGGATCG ACCGTGGTTG TGTCTCCGAT TTACCTTCAT 
    CTCTCTCGA

AT2G04170.5

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT5G26280.1); Has 40157 Blast hits to 13977 proteins in 907 species: Archae - 22; Bacteria - 17141; Metazoa - 12439; Fungi - 1936; Plants - 3869; Viruses - 495; Other Eukaryotes - 4255 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G04180.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 3.6e-05 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR

AT3G43572.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR