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GT23300

CSHL Arabidopsis genetrap mutant lines

Original: GT23300

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23300

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22164385 [Map]; Strand: w
      • AT3G60010.1 - [+] show detail - SKP1-like 13
        Distance: -827; Region: promoter
    Flanking Genome Sequence: GT23300 - 5-prime edge 
    CTCCCTGGTT TCTCGCAAGA GAAAAAAACT TTACAGAGTA AAACTTTCAC 
    ACTTTTTTTA TTTTTTGATT GTTCAATCTT GACCATTTAC ATCGGTCTGA 
    TTACGATACA ACAATATAAA CCAAAATAAC CAAGTTGAAT ATCGAAATTG 
    AAGTGTCATG TACTCTGTTT CGGATTAGAA AACTCAATTA CAGTAAGAAA 
    ATGAGAAAAA GATTTGACTT CACATATATT CAAGAATTGC TTCAGAAACA 
    AAAGAAAGAC TCTTAACAAC ATCGATCTTA AGATTTGGTT AGCATACCAA 
    AATCCAACAA ACGATTCGTC TCTAAAGCAA AGATACAAAC ATTGGTTGAC 
    TTACACACCA AGAAATCAAA AGAAACACAC CGAACAAACA AGAGATAGAC 
    GAAGTCTTAG TCATCAATCT ACATGAAGCA TAAAGAAAAC TGAAAACACA 
    CACACACTAA AGAAGAAAAA GATATAGACG AAGTCACCAG CTACGTAGAT 
    TTGCATCAAC AACTTTGATG ATCCGCTCTC TCATTGAAAA GCCCATTGAT 
    TCTCCTCACG AATCTTAGCT ACTTCCTCTG CTGTTAGATC GTTCTCGATG 
    TTGAAGTGCG CGCGAATCTC ATCTGGAGTT TTCCCTGAGA GCAAATCAGC 
    CTGGAGCAAA TCCGAGACAG TTTTACATGT GAGATCAAGA AGGCTTTGAA 
    TATTGAGATA ATTCGCAGCC ATCATAACAT C

AT3G60010.1

Model type
Protein coding
Short Description
SKP1-like 13
Computational Description
SKP1-like 13 (SK13); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, seedling growth, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: SKP1-like 11 (TAIR:AT4G34210.1); Has 1418 Blast hits to 1414 proteins in 268 species: Archae - 0; Bacteria - 0; Metazoa - 525; Fungi - 176; Plants - 537; Viruses - 11; Other Eukaryotes - 169 (source: NCBI BLink).
Link
InterPro Scan - TAIR