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GT23386

CSHL Arabidopsis genetrap mutant lines

Original: GT23386

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23386

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20179521 [Map]; Strand: c
      • AT3G54500.3 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -494; Region: promoter
      • AT3G54500.4 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -494; Region: promoter
      • AT3G54500.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-relate...
        Distance: -539; Region: promoter
      • AT3G54500.2 - [+] show detail - BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-relate...
        Distance: -541; Region: promoter
      • AT3G54510.1 - [+] show detail - Early-responsive to dehydration stress protein (ERD4)
        Distance: -771; Region: promoter
      • AT3G54510.2 - [+] show detail - Early-responsive to dehydration stress protein (ERD4)
        Distance: -771; Region: promoter
    Flanking Genome Sequence: GT23386 - 5-prime edge 
    CGCTCAACCA ATCGAGGCAC AAAGCCTATT AACAAGGTCT GAAAATTTTC 
    AACCTAGTCA TCAAGGACGA AAACGATTTC ATTATAATTG AAAAATAAAC 
    ACACTTATTA AAAAATATAT ATCAATTGCA ACCATTTATA TCCACTGTTT 
    CGTTATGAAC TGTTCAGGAT AACGCATTAG TTCCTTTTCA ATAAACTGAT 
    CCAAGCAAAT ACTTTTGAAA AAGTGGATAT CAATGAAAGC TAAATTAGTT 
    AAAACATATA AGATAAAAAT TGTGGTCGCT ATGAACTCAA ACCCCACCAA 
    ATCTAAAAGT TGAACACTGG TTCCACTCTT TTAAAAACAT ATTTACCCAA 
    TTGTGTGTCT CTTCATCTCA CTCGA

AT3G54500.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT5G64170.1); Has 183 Blast hits to 175 proteins in 44 species: Archae - 0; Bacteria - 4; Metazoa - 38; Fungi - 11; Plants - 120; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G54500.2

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT5G64170.1); Has 162 Blast hits to 160 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 23; Fungi - 11; Plants - 118; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G54500.3

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT5G64170.1).
Link
InterPro Scan - TAIR

AT3G54500.4

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT5G64170.2).
Link
InterPro Scan - TAIR

AT3G54510.1

Model type
Protein coding
Short Description
Early-responsive to dehydration stress protein (ERD4)
Computational Description
Early-responsive to dehydration stress protein (ERD4); LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: hypothetical protein 1 (TAIR:AT3G01100.1); Has 1250 Blast hits to 1225 proteins in 183 species: Archae - 0; Bacteria - 0; Metazoa - 176; Fungi - 586; Plants - 385; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G54510.2

Model type
Protein coding
Short Description
Early-responsive to dehydration stress protein (ERD4)
Computational Description
Early-responsive to dehydration stress protein (ERD4); LOCATED IN: membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: hypothetical protein 1 (TAIR:AT3G01100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR