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GT23421

CSHL Arabidopsis genetrap mutant lines

Original: GT23421

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23421

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19324792 [Map]; Strand: w
      • AT2G47030.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT23421 - 5-prime edge 
    TCTCTCTGGC GTTAGTTTCC TGTCGGGCAC GATGCGGCAG TTTCGGAGGA 
    CGATACCAAT TTTCATCCCT AAGCCCAATT CGTTTCCATC GGCTGTGACC 
    GTGTTGTATT GTCCCTTGCT TCCTTTACGG ACAACAATTA GTGTGTTTTG 
    GATCACGGTT GCGGATTTGC CGAAGATGAA GTCTACTGTT CCCGAGACCA 
    CACAGTTTCT GTAGAACTGA CGACCGTTGT TAACGTACAA TGTGTCTTGA 
    TAACCGTCGA ATCTGCAGTT GAAGATCACG GCACGGTCTC CGTTCACTCG 
    GATAGCCGCG GCTTGGTGTC CCATTGGACC GGCGGTGTTC TTGAATCCCA 
    TCCATTTCGC CATGAATCCT TCCGATTCAA CCTCTGCACA ATATATATAT 
    CGAAAACATG AATTATGTAG AGAAAAATAT GTGTAACCTA ACTACTGAAT 
    TAGGGTTTGA TGAGACTTAC GAACTGTGGC ACTGAGGGAT GTGGTGGTTC 
    CACGGCTGAG AGCAACACTT CTGTTGTAAG AAATGACGGT CTTTCTTGCA 
    CCATCTCCAA ACATGAAGAT GTTGTTGTTC TTCTCACTCA ACAATACTTG 
    CTCTCTGTAG AGACCGGCCT TGATGTAGAT GATGCATCGG CCTCGGTTAT 
    TCTCAGGACA AGCATCAACG GCTTGTTGAA CCGTCTTAAA CTGTCCGCTT 
    CCATCCTTAG CCACCACAAA GTTCGCTCTG ACCCTAGCAC CGCCTCCGCG 
    GCCGCCTCTA CGGCCACGTC CAGCCTTAGC CATGAGCTTC CTGTCAGCAC 
    CTGAAAA

AT2G47030.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily
Computational Description
VGDH1; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: male gametophyte, flower, pollen tube; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT2G47040.1); Has 2990 Blast hits to 2923 proteins in 471 species: Archae - 6; Bacteria - 907; Metazoa - 1; Fungi - 197; Plants - 1853; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Link
InterPro Scan - TAIR