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GT23437

CSHL Arabidopsis genetrap mutant lines

Original: GT23437

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23437

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 178704 [Map]; Strand: w
      • AT4G00413.1 - [+] show detail - pseudogene, similar to tomato ripening associated membrane protein, blastp ma...
        Distance: -543; Region: promoter
      • AT4G00416.1 - [+] show detail - methyl-CPG-binding domain 3
        Distance: -318; Region: promoter
    Flanking Genome Sequence: GT23437 - 5-prime edge 
    TTCTCCCCTG CTTCTTATAA GGCTTAAAAG CCAACTTAAA TGCTATTGCA 
    GTAAAGATTT CATTCCTTCT TCATCTCACT CGACCAATCT AAAGGATATA 
    TTTAGTTCTT CTTCACTTCA ACTAAAAGGC TAAACTCCCA AAAAAATATT 
    TTTATCTCTC TCAAAACTTG AAATATGGTG AGGAAGACTA CTCAAGCTAC 
    ATCTCACAAG GTATCGACAA TATTTTATTT TTATTATTGC ATGAAGATTT 
    GTTTTGTCAA TGCATGAAGA TCCCAAAACT TGAAATATGG TGTTTTATTT 
    TTATCATTAC ATGAAGATTC GTTTTTTATC ATTGCATCTC ACAAGGTATC 
    GACAATGTTT TATTTTTATC TTAGTCTTTG TTTGGTTTTA TGTGTGTAGC 
    GAAAACCAAC GACATCGTTA ATTGACTCAT ACGCTGCACA ATGTTGGAAG 
    TGTCTTAAAG TGAGATCTAT AGAGTCACAA GAAGATTATG AAGAAATTCG 
    TAATAAAACA CTGGAAAAGT TTTTTGAATG CAAGAAATGT GAAGAAC

AT4G00413.1

Model type
Pseudogene
Computational Description
pseudogene, similar to tomato ripening associated membrane protein, blastp match of 91% identity and 4.3e-11 P-value to GP|395044|emb|CAA52067.1||X73847 tomato ripening associated membrane protein {Lycopersicon esculentum}
Link
InterPro Scan - TAIR

AT4G00416.1

Model type
Protein coding
Short Description
methyl-CPG-binding domain 3
Curator Summary
Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.
Computational Description
methyl-CPG-binding domain 3 (MBD3); FUNCTIONS IN: methyl-CpG binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: methyl-CPG-binding domain 4 (TAIR:AT3G63030.1); Has 103 Blast hits to 103 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR