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GT23506

CSHL Arabidopsis genetrap mutant lines

Original: GT23506

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23506

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9100635 [Map]; Strand: w
      • AT1G26300.1 - [+] show detail - BSD domain-containing protein
        Distance: -881; Region: promoter
      • AT1G26300.2 - [+] show detail - BSD domain-containing protein
        Distance: -881; Region: promoter
      • AT1G26310.1 - [+] show detail - K-box region and MADS-box transcription factor family protein
        Distance: 0; Region: intron7 (CDS)
    Flanking Genome Sequence: GT23506 - 5-prime edge 
    TGACACACTT CACTATATAT GAGAATTTGA CATTATGGTA AGACAAAAGA 
    ACTTAAAAAA ACAAGAAATA CTGCCGTTAC CCCATATTTA GGAAAGGAGA 
    AGTCTGATGA GCGATCATGT AAAGATGGGG GTGTTGAAAT GGTTGTGGCT 
    GTGGTACATC GTCGACGCTG CGGTTCAGCT GCTCACATTG GGTTTGTTTT 
    GTCTTTAGGA TGTTTTCCCT CTCCTTTATC TATACCGATT ACACGCGCCA 
    AGAAAATGAT ATAATCATCT TCGTTAGATA GATTCCCATT TGCAGCTAAT 
    CAGCTATTTG CATTGATTCG AGGAATTTCT ATTTTTTATT CATAGACTTT 
    TTTTTGTAAT ATGAA

AT1G26300.1

Model type
Protein coding
Short Description
BSD domain-containing protein
Computational Description
BSD domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain-containing protein (TAIR:AT1G69030.1); Has 242 Blast hits to 239 proteins in 42 species: Archae - 4; Bacteria - 13; Metazoa - 9; Fungi - 4; Plants - 182; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G26300.2

Model type
Protein coding
Short Description
BSD domain-containing protein
Computational Description
BSD domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain-containing protein (TAIR:AT1G69030.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G26310.1

Model type
Protein coding
Short Description
K-box region and MADS-box transcription factor family protein
Curator Summary
Floral homeotic gene encoding a MADS domain protein homologous to AP1. Enhances the flower to shoot transformation in ap1 mutants.
Computational Description
CAULIFLOWER (CAL); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: positive regulation of flower development, floral meristem determinacy; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT1G69120.1); Has 8035 Blast hits to 8024 proteins in 979 species: Archae - 8; Bacteria - 30; Metazoa - 829; Fungi - 313; Plants - 6634; Viruses - 0; Other Eukaryotes - 221 (source: NCBI BLink).
Link
InterPro Scan - TAIR