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GT23511

CSHL Arabidopsis genetrap mutant lines

Original: GT23511

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23511

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 339858 [Map]; Strand: c
      • AT3G02010.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT23511 - 3-prime edge 
    ACCGACCGTT ACCGACCGTT TTCATCCCTA GTCGTCAGTG TTGAACGCAT 
    GTCGGATTCA CAAGAATCAA AGCCTTGCTG AGAGAGCAGC AGAGAAGCTC 
    TTCAGTATGG AGAAGCTCAG GGACGCTGCT GCTTATGTAA GCATGTCAAA 
    CATCTATGCA GCGGCTGGGG AATGGGAAAA AGTTAGGGAT GTGAAGAAAG 
    CAATGCGCGA ACGCGGAATC AAAAAGGTTC CGGCTTATAG CTGGGTAGAA 
    GTTAACCACA AGATTCATGT GTTCTCATCA AATGATCAGA CACACCCAAA 
    CGGAGATGAG ATCGTGAGAA AGATCAATGA ATTGACAGCT GAGATTGAGA 
    GAGAAGGGTA CAAGCCTGAC ACGAGTTCGG TAGTACAAGA CGTAGATGAG 
    CAGATGAAGA TTGAGTCGCT TAAGTACCAC AGTGAACGTT TAGCCGTTGC 
    ATTTGCTCTG ATCAGTACAC CAGAAGGGTG TCCGATTGTT GTGATGAAGA 
    ACTTGAGGGC CTGCAGGGAT TGCCATGCTG CAATAAAACT AATATCGAAG 
    ATTGTAAAGA GGGAGATAAC TGTAAGGGAT ACAAGCAGAT TCCATCACTT 
    TAGTGAGGGG GTCTGTTCTT GTGGTGATTA CTGGTGA

AT3G02010.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G27610.1); Has 47268 Blast hits to 13605 proteins in 263 species: Archae - 0; Bacteria - 2; Metazoa - 64; Fungi - 106; Plants - 46551; Viruses - 0; Other Eukaryotes - 545 (source: NCBI BLink).
Link
InterPro Scan - TAIR