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GT23701

CSHL Arabidopsis genetrap mutant lines

Original: GT23701

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23701

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4870191 [Map]; Strand: c
      • AT3G14515.1 - [+] show detail - pseudogene, terpene synthase (fragment), similar to C-term of terpene synthas...
        Distance: -376; Region: promoter
      • AT3G14517.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT23701 - 3-prime edge 
    TACCGACCGT TACCGACCGT TTTCATCCCT AGCTGAGGCA TAACTACACG 
    AGAAGAACAA GTGGTCTCGT GTTTCAATAG ATGTGGAGCA GAATGTACAC 
    TTCACATCAG AGCCATTATT CCAAAGCTGC ATTCGATCTC CCGTTGATAA 
    CCTATTACGC AAAGCAAGCC AAGTACAGAA CTGATATTTC GGAGTAGAGT 
    GACTGAACCA TACCCCTTTA TACCAAGCCA CCTCGTTTGA TTTTTTACGA 
    ACCTGATTCC ATGTGTCTTT GGTGGAAAAG CTTGTCTTAA AAACGTCCCC 
    CTTACCTCTC CATAAAGCTG CATCTTCCCG AAGCAAAATG CGTGTCTGAT 
    ATTTCTGGTT TAAGGCTGCC TCAATATCAT TTAGCTGTTC TGTTCGATGT 
    TTCCTTCTCC TTCTATTACT CCAAGCCTCT GCCACTGTTT TGTTCCGGCT 
    TATTCCAAGG TCTATTTGCC CCCTCTGTCC TGTTACATCC ATCAAATGGC 
    CCATTCCCGA CCAGTTATCA AACCAGAACG AAGTCCGAGC TCCATTATTC 
    ATCTCAATCC ACCAAAACGG CTTCGCTGTT TCTCTATACT TCAACATTTT 
    TTTCCACATC CAAGATCCTA AGCTTGAGTT GGGCTTTAGA GACCAAAAAG 
    ACTC

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT23701 - 5-prime edge 
    ATTATTACGG CCGCCGATCG ATTTCTCC

AT3G14515.1

Model type
Pseudogene
Computational Description
pseudogene, terpene synthase (fragment), similar to C-term of terpene synthase (TS1) GB:CAA72074 (Arabidopsis thaliana); blastp match of 37% identity and 2.4e-15 P-value to GP|15321626|gb|AAK95517.1|AF401234_1|AF401234 cyclase {Nicotiana tabacum}
Link
InterPro Scan - TAIR

AT3G14517.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 9.0e-38 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR